Strain Fitness in Marinobacter adhaerens HP15 around HP15_654

Experiment: m.b. Paraquat dichloride 0.0075 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_651 and HP15_652 are separated by 123 nucleotidesHP15_652 and HP15_653 are separated by 50 nucleotidesHP15_653 and HP15_654 overlap by 1 nucleotidesHP15_654 and HP15_655 are separated by 90 nucleotidesHP15_655 and HP15_656 are separated by 28 nucleotidesHP15_656 and HP15_657 are separated by 9 nucleotides HP15_651: HP15_651 - protein putative phage tail tape measure protein-like protein, at 672,672 to 674,426 _651 HP15_652: HP15_652 - conserved hypothetical protein, at 674,550 to 674,834 _652 HP15_653: HP15_653 - phage major tail tube protein, at 674,885 to 675,391 _653 HP15_654: HP15_654 - major tail sheath protein, at 675,391 to 676,908 _654 HP15_655: HP15_655 - phage tail collar domain protein-like protein, at 676,999 to 677,463 _655 HP15_656: HP15_656 - tail fiber assembly protein-like protein, at 677,492 to 677,773 _656 HP15_657: HP15_657 - phage tail fiber protein, at 677,783 to 679,219 _657 Position (kb) 675 676 677Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 674.461 kb on - strandat 674.463 kb on + strandat 674.518 kb on + strandat 674.574 kb on + strandat 674.576 kb on + strandat 674.710 kb on - strand, within HP15_652at 674.741 kb on + strand, within HP15_652at 674.811 kb on + strandat 674.819 kb on - strandat 674.843 kb on - strandat 674.941 kb on + strand, within HP15_653at 675.027 kb on + strand, within HP15_653at 675.032 kb on + strand, within HP15_653at 675.054 kb on - strand, within HP15_653at 675.111 kb on - strand, within HP15_653at 675.139 kb on - strand, within HP15_653at 675.198 kb on + strand, within HP15_653at 675.250 kb on + strand, within HP15_653at 675.250 kb on + strand, within HP15_653at 675.250 kb on - strand, within HP15_653at 675.258 kb on - strand, within HP15_653at 675.258 kb on - strand, within HP15_653at 675.258 kb on - strand, within HP15_653at 675.309 kb on - strand, within HP15_653at 675.312 kb on + strand, within HP15_653at 675.333 kb on + strand, within HP15_653at 675.333 kb on + strand, within HP15_653at 675.341 kb on - strandat 675.341 kb on - strandat 675.366 kb on - strandat 675.366 kb on - strandat 675.366 kb on - strandat 675.366 kb on - strandat 675.376 kb on - strandat 675.440 kb on + strandat 675.455 kb on - strandat 675.482 kb on + strandat 675.488 kb on + strandat 675.525 kb on - strandat 675.589 kb on - strand, within HP15_654at 675.619 kb on + strand, within HP15_654at 675.644 kb on + strand, within HP15_654at 675.644 kb on + strandat 675.814 kb on - strand, within HP15_654at 675.827 kb on + strand, within HP15_654at 675.877 kb on + strand, within HP15_654at 675.903 kb on + strand, within HP15_654at 675.944 kb on + strand, within HP15_654at 675.951 kb on + strand, within HP15_654at 675.952 kb on - strand, within HP15_654at 675.964 kb on + strand, within HP15_654at 676.061 kb on - strand, within HP15_654at 676.063 kb on + strand, within HP15_654at 676.069 kb on - strand, within HP15_654at 676.071 kb on - strand, within HP15_654at 676.130 kb on + strand, within HP15_654at 676.160 kb on + strand, within HP15_654at 676.173 kb on - strand, within HP15_654at 676.221 kb on + strand, within HP15_654at 676.221 kb on + strand, within HP15_654at 676.224 kb on - strand, within HP15_654at 676.308 kb on - strand, within HP15_654at 676.379 kb on + strand, within HP15_654at 676.452 kb on - strand, within HP15_654at 676.455 kb on + strand, within HP15_654at 676.520 kb on - strand, within HP15_654at 676.539 kb on - strand, within HP15_654at 676.539 kb on - strand, within HP15_654at 676.544 kb on - strand, within HP15_654at 676.564 kb on - strand, within HP15_654at 676.654 kb on + strand, within HP15_654at 676.662 kb on - strand, within HP15_654at 676.881 kb on + strandat 676.881 kb on + strandat 676.889 kb on - strandat 676.889 kb on - strandat 676.935 kb on - strandat 677.150 kb on - strand, within HP15_655at 677.249 kb on - strand, within HP15_655at 677.249 kb on - strand, within HP15_655at 677.326 kb on - strand, within HP15_655at 677.405 kb on - strand, within HP15_655at 677.434 kb on - strandat 677.439 kb on - strandat 677.498 kb on - strandat 677.545 kb on - strand, within HP15_656at 677.582 kb on - strand, within HP15_656at 677.582 kb on - strand, within HP15_656at 677.733 kb on + strand, within HP15_656at 677.736 kb on - strand, within HP15_656at 677.793 kb on + strandat 677.793 kb on + strandat 677.865 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml
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674,461 - +0.7
674,463 + +0.4
674,518 + -1.2
674,574 + +2.3
674,576 + +0.3
674,710 - HP15_652 0.56 -0.0
674,741 + HP15_652 0.67 -0.8
674,811 + +0.7
674,819 - +0.2
674,843 - +0.0
674,941 + HP15_653 0.11 -0.4
675,027 + HP15_653 0.28 +2.3
675,032 + HP15_653 0.29 -0.5
675,054 - HP15_653 0.33 -0.6
675,111 - HP15_653 0.45 +0.2
675,139 - HP15_653 0.50 -0.1
675,198 + HP15_653 0.62 -0.2
675,250 + HP15_653 0.72 +0.5
675,250 + HP15_653 0.72 -1.4
675,250 - HP15_653 0.72 +0.3
675,258 - HP15_653 0.74 -1.8
675,258 - HP15_653 0.74 +1.7
675,258 - HP15_653 0.74 -0.3
675,309 - HP15_653 0.84 +1.3
675,312 + HP15_653 0.84 -2.4
675,333 + HP15_653 0.88 +1.7
675,333 + HP15_653 0.88 -1.1
675,341 - -0.7
675,341 - +1.2
675,366 - -0.1
675,366 - +1.6
675,366 - -0.8
675,366 - -0.9
675,376 - -0.0
675,440 + -0.3
675,455 - +0.4
675,482 + -1.0
675,488 + +0.4
675,525 - -0.9
675,589 - HP15_654 0.13 +1.7
675,619 + HP15_654 0.15 -1.5
675,644 + HP15_654 0.17 +0.2
675,644 + +1.7
675,814 - HP15_654 0.28 -1.4
675,827 + HP15_654 0.29 +0.3
675,877 + HP15_654 0.32 +1.0
675,903 + HP15_654 0.34 -0.5
675,944 + HP15_654 0.36 +1.3
675,951 + HP15_654 0.37 +1.0
675,952 - HP15_654 0.37 -0.9
675,964 + HP15_654 0.38 -1.7
676,061 - HP15_654 0.44 -1.0
676,063 + HP15_654 0.44 -1.0
676,069 - HP15_654 0.45 -1.2
676,071 - HP15_654 0.45 -1.3
676,130 + HP15_654 0.49 +0.7
676,160 + HP15_654 0.51 +0.7
676,173 - HP15_654 0.52 -0.5
676,221 + HP15_654 0.55 +0.7
676,221 + HP15_654 0.55 -2.7
676,224 - HP15_654 0.55 -0.3
676,308 - HP15_654 0.60 +0.7
676,379 + HP15_654 0.65 -0.5
676,452 - HP15_654 0.70 -0.5
676,455 + HP15_654 0.70 +1.7
676,520 - HP15_654 0.74 +0.2
676,539 - HP15_654 0.76 -2.2
676,539 - HP15_654 0.76 +1.7
676,544 - HP15_654 0.76 -1.1
676,564 - HP15_654 0.77 +0.2
676,654 + HP15_654 0.83 +2.3
676,662 - HP15_654 0.84 +0.4
676,881 + -2.0
676,881 + +3.3
676,889 - -3.2
676,889 - +0.2
676,935 - -0.1
677,150 - HP15_655 0.32 -0.6
677,249 - HP15_655 0.54 +1.0
677,249 - HP15_655 0.54 +0.2
677,326 - HP15_655 0.70 -0.9
677,405 - HP15_655 0.87 -1.1
677,434 - -0.0
677,439 - -0.7
677,498 - -0.1
677,545 - HP15_656 0.19 -1.4
677,582 - HP15_656 0.32 +0.7
677,582 - HP15_656 0.32 -0.7
677,733 + HP15_656 0.85 +0.3
677,736 - HP15_656 0.87 +3.0
677,793 + -1.3
677,793 + +2.3
677,865 - +0.2

Or see this region's nucleotide sequence