Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0499

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0498 and Psest_0499 are separated by 123 nucleotidesPsest_0499 and Psest_0500 are separated by 28 nucleotidesPsest_0500 and Psest_0501 are separated by 186 nucleotides Psest_0498: Psest_0498 - ribosome small subunit-dependent GTPase A, at 552,927 to 553,958 _0498 Psest_0499: Psest_0499 - hypothetical protein, at 554,082 to 554,888 _0499 Psest_0500: Psest_0500 - Oligoribonuclease (3'->5' exoribonuclease), at 554,917 to 555,459 _0500 Psest_0501: Psest_0501 - Predicted nucleoside-diphosphate-sugar epimerases, at 555,646 to 556,287 _0501 Position (kb) 554 555Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 553.209 kb on - strand, within Psest_0498at 553.396 kb on + strand, within Psest_0498at 553.411 kb on + strand, within Psest_0498at 553.963 kb on + strandat 553.963 kb on + strandat 553.964 kb on - strandat 553.964 kb on - strandat 553.993 kb on + strandat 553.993 kb on + strandat 553.993 kb on + strandat 553.993 kb on + strandat 553.993 kb on + strandat 553.994 kb on - strandat 554.046 kb on + strandat 554.046 kb on + strandat 554.047 kb on - strandat 554.047 kb on - strandat 554.047 kb on - strandat 554.099 kb on + strandat 554.137 kb on + strandat 554.415 kb on + strand, within Psest_0499at 554.415 kb on + strand, within Psest_0499at 554.415 kb on + strand, within Psest_0499at 554.416 kb on - strand, within Psest_0499at 554.416 kb on - strand, within Psest_0499at 554.416 kb on - strand, within Psest_0499at 554.668 kb on - strand, within Psest_0499at 554.668 kb on - strand, within Psest_0499at 554.680 kb on - strand, within Psest_0499at 554.680 kb on - strand, within Psest_0499at 554.680 kb on - strand, within Psest_0499at 555.290 kb on - strand, within Psest_0500at 555.290 kb on - strand, within Psest_0500at 555.541 kb on + strandat 555.541 kb on + strandat 555.541 kb on + strandat 555.541 kb on + strandat 555.541 kb on + strandat 555.541 kb on + strandat 555.541 kb on + strandat 555.541 kb on + strandat 555.541 kb on + strandat 555.542 kb on - strandat 555.542 kb on - strandat 555.542 kb on - strandat 555.542 kb on - strandat 555.542 kb on - strandat 555.542 kb on - strandat 555.542 kb on - strandat 555.560 kb on + strandat 555.560 kb on + strandat 555.560 kb on + strandat 555.560 kb on + strandat 555.561 kb on - strandat 555.561 kb on - strandat 555.561 kb on - strandat 555.758 kb on + strand, within Psest_0501at 555.758 kb on + strand, within Psest_0501at 555.759 kb on - strand, within Psest_0501

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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553,209 - Psest_0498 0.27 -0.8
553,396 + Psest_0498 0.45 -1.4
553,411 + Psest_0498 0.47 -0.5
553,963 + -0.5
553,963 + -0.2
553,964 - +1.2
553,964 - -0.4
553,993 + -2.3
553,993 + -0.1
553,993 + -0.9
553,993 + -0.2
553,993 + +0.5
553,994 - -2.9
554,046 + +2.0
554,046 + +0.5
554,047 - -0.3
554,047 - +0.7
554,047 - +0.1
554,099 + -0.3
554,137 + -0.5
554,415 + Psest_0499 0.41 -0.3
554,415 + Psest_0499 0.41 -1.1
554,415 + Psest_0499 0.41 -2.4
554,416 - Psest_0499 0.41 -0.3
554,416 - Psest_0499 0.41 -1.2
554,416 - Psest_0499 0.41 -0.8
554,668 - Psest_0499 0.73 -0.2
554,668 - Psest_0499 0.73 -0.7
554,680 - Psest_0499 0.74 -0.7
554,680 - Psest_0499 0.74 -1.6
554,680 - Psest_0499 0.74 +0.0
555,290 - Psest_0500 0.69 -1.4
555,290 - Psest_0500 0.69 -1.0
555,541 + +0.1
555,541 + +0.1
555,541 + +0.7
555,541 + -0.7
555,541 + +0.5
555,541 + +0.6
555,541 + +0.5
555,541 + -0.7
555,541 + -0.4
555,542 - +0.4
555,542 - +0.4
555,542 - +0.2
555,542 - -0.8
555,542 - +1.2
555,542 - -0.7
555,542 - -0.5
555,560 + -2.7
555,560 + +0.6
555,560 + +0.9
555,560 + -1.4
555,561 - -0.6
555,561 - -1.1
555,561 - +1.1
555,758 + Psest_0501 0.17 -0.9
555,758 + Psest_0501 0.17 -0.4
555,759 - Psest_0501 0.18 +0.9

Or see this region's nucleotide sequence