Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g115 and HP15_p187g116 are separated by 130 nucleotides HP15_p187g116 and HP15_p187g117 are separated by 467 nucleotides
HP15_p187g115: HP15_p187g115 - peptidase S15, at 114,445 to 116,442
_p187g115
HP15_p187g116: HP15_p187g116 - membrane protein, at 116,573 to 117,064
_p187g116
HP15_p187g117: HP15_p187g117 - phage integrase family protein, at 117,532 to 118,788
_p187g117
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 115.637 kb on + strand, within HP15_p187g115 at 115.645 kb on - strand, within HP15_p187g115 at 115.645 kb on - strand, within HP15_p187g115 at 115.645 kb on - strand, within HP15_p187g115 at 115.650 kb on + strand, within HP15_p187g115 at 115.650 kb on - strand, within HP15_p187g115 at 115.657 kb on + strand, within HP15_p187g115 at 115.678 kb on + strand, within HP15_p187g115 at 115.678 kb on - strand, within HP15_p187g115 at 115.688 kb on + strand, within HP15_p187g115 at 115.688 kb on + strand, within HP15_p187g115 at 115.702 kb on + strand, within HP15_p187g115 at 115.727 kb on + strand, within HP15_p187g115 at 115.748 kb on - strand, within HP15_p187g115 at 115.817 kb on + strand, within HP15_p187g115 at 115.824 kb on + strand, within HP15_p187g115 at 115.825 kb on - strand, within HP15_p187g115 at 115.825 kb on - strand, within HP15_p187g115 at 115.825 kb on - strand, within HP15_p187g115 at 115.825 kb on - strand, within HP15_p187g115 at 115.825 kb on - strand, within HP15_p187g115 at 115.830 kb on - strand, within HP15_p187g115 at 115.834 kb on - strand, within HP15_p187g115 at 115.852 kb on + strand, within HP15_p187g115 at 115.860 kb on - strand, within HP15_p187g115 at 115.876 kb on - strand, within HP15_p187g115 at 115.881 kb on - strand, within HP15_p187g115 at 115.893 kb on + strand, within HP15_p187g115 at 115.897 kb on + strand, within HP15_p187g115 at 115.907 kb on - strand, within HP15_p187g115 at 115.973 kb on - strand, within HP15_p187g115 at 115.976 kb on + strand, within HP15_p187g115 at 115.989 kb on - strand, within HP15_p187g115 at 115.997 kb on + strand, within HP15_p187g115 at 115.997 kb on + strand, within HP15_p187g115 at 115.997 kb on + strand, within HP15_p187g115 at 115.997 kb on + strand, within HP15_p187g115 at 115.997 kb on + strand, within HP15_p187g115 at 116.005 kb on - strand, within HP15_p187g115 at 116.005 kb on - strand, within HP15_p187g115 at 116.005 kb on - strand, within HP15_p187g115 at 116.005 kb on - strand, within HP15_p187g115 at 116.006 kb on + strand, within HP15_p187g115 at 116.006 kb on + strand, within HP15_p187g115 at 116.104 kb on + strand, within HP15_p187g115 at 116.107 kb on - strand, within HP15_p187g115 at 116.121 kb on + strand, within HP15_p187g115 at 116.129 kb on - strand, within HP15_p187g115 at 116.159 kb on - strand, within HP15_p187g115 at 116.199 kb on - strand, within HP15_p187g115 at 116.200 kb on + strand, within HP15_p187g115 at 116.200 kb on + strand, within HP15_p187g115 at 116.243 kb on - strand at 116.273 kb on + strand at 116.273 kb on + strand at 116.281 kb on - strand at 116.281 kb on - strand at 116.281 kb on - strand at 116.283 kb on + strand at 116.283 kb on + strand at 116.286 kb on - strand at 116.286 kb on - strand at 116.286 kb on - strand at 116.291 kb on - strand at 116.298 kb on + strand at 116.312 kb on + strand at 116.312 kb on + strand at 116.314 kb on + strand at 116.317 kb on + strand at 116.320 kb on - strand at 116.320 kb on - strand at 116.320 kb on - strand at 116.322 kb on + strand at 116.324 kb on + strand at 116.324 kb on + strand at 116.325 kb on - strand at 116.325 kb on - strand at 116.332 kb on - strand at 116.332 kb on - strand at 116.361 kb on + strand at 116.381 kb on + strand at 116.382 kb on + strand at 116.398 kb on + strand at 116.429 kb on + strand at 116.472 kb on + strand at 116.487 kb on - strand at 116.508 kb on - strand at 116.508 kb on - strand at 116.515 kb on + strand at 116.517 kb on - strand at 116.540 kb on - strand at 116.544 kb on + strand at 116.546 kb on - strand at 116.546 kb on - strand at 116.546 kb on - strand at 116.552 kb on - strand at 116.555 kb on + strand at 116.563 kb on - strand at 116.563 kb on - strand at 116.579 kb on - strand at 116.607 kb on - strand at 116.686 kb on + strand, within HP15_p187g116 at 116.702 kb on - strand, within HP15_p187g116 at 116.712 kb on + strand, within HP15_p187g116 at 116.712 kb on + strand, within HP15_p187g116 at 116.718 kb on + strand, within HP15_p187g116 at 116.720 kb on - strand, within HP15_p187g116 at 116.738 kb on + strand, within HP15_p187g116 at 116.746 kb on - strand, within HP15_p187g116 at 116.773 kb on + strand, within HP15_p187g116 at 116.874 kb on + strand, within HP15_p187g116 at 116.936 kb on - strand, within HP15_p187g116 at 117.086 kb on - strand at 117.103 kb on - strand at 117.139 kb on + strand at 117.147 kb on - strand at 117.147 kb on - strand at 117.147 kb on - strand at 117.147 kb on - strand at 117.173 kb on + strand at 117.205 kb on + strand at 117.225 kb on - strand at 117.294 kb on + strand at 117.303 kb on - strand at 117.313 kb on - strand at 117.383 kb on - strand at 117.428 kb on + strand at 117.453 kb on + strand at 117.494 kb on + strand at 117.500 kb on - strand at 117.517 kb on + strand at 117.613 kb on - strand at 117.665 kb on + strand, within HP15_p187g117 at 117.706 kb on + strand, within HP15_p187g117 at 117.714 kb on - strand, within HP15_p187g117 at 117.716 kb on + strand, within HP15_p187g117 at 117.769 kb on + strand, within HP15_p187g117 at 117.775 kb on + strand, within HP15_p187g117 at 117.972 kb on - strand, within HP15_p187g117 at 117.982 kb on - strand, within HP15_p187g117 at 117.994 kb on + strand, within HP15_p187g117 at 117.994 kb on + strand, within HP15_p187g117 at 118.002 kb on - strand, within HP15_p187g117 at 118.002 kb on - strand, within HP15_p187g117 at 118.027 kb on + strand, within HP15_p187g117 at 118.027 kb on + strand, within HP15_p187g117 at 118.052 kb on + strand, within HP15_p187g117 at 118.052 kb on + strand, within HP15_p187g117 at 118.060 kb on - strand, within HP15_p187g117 at 118.060 kb on - strand, within HP15_p187g117
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 115,637 + HP15_p187g115 0.60 +0.4 115,645 - HP15_p187g115 0.60 +2.1 115,645 - HP15_p187g115 0.60 +1.4 115,645 - HP15_p187g115 0.60 -0.6 115,650 + HP15_p187g115 0.60 +0.2 115,650 - HP15_p187g115 0.60 +2.6 115,657 + HP15_p187g115 0.61 -1.1 115,678 + HP15_p187g115 0.62 +0.1 115,678 - HP15_p187g115 0.62 +0.8 115,688 + HP15_p187g115 0.62 +1.9 115,688 + HP15_p187g115 0.62 -0.8 115,702 + HP15_p187g115 0.63 -1.0 115,727 + HP15_p187g115 0.64 +0.9 115,748 - HP15_p187g115 0.65 +2.3 115,817 + HP15_p187g115 0.69 +0.8 115,824 + HP15_p187g115 0.69 -1.1 115,825 - HP15_p187g115 0.69 -0.7 115,825 - HP15_p187g115 0.69 -1.6 115,825 - HP15_p187g115 0.69 -1.4 115,825 - HP15_p187g115 0.69 -1.7 115,825 - HP15_p187g115 0.69 +1.3 115,830 - HP15_p187g115 0.69 -2.1 115,834 - HP15_p187g115 0.70 +0.3 115,852 + HP15_p187g115 0.70 +1.2 115,860 - HP15_p187g115 0.71 -1.8 115,876 - HP15_p187g115 0.72 +0.1 115,881 - HP15_p187g115 0.72 -1.7 115,893 + HP15_p187g115 0.72 -1.8 115,897 + HP15_p187g115 0.73 +2.0 115,907 - HP15_p187g115 0.73 -0.5 115,973 - HP15_p187g115 0.76 +0.1 115,976 + HP15_p187g115 0.77 +1.2 115,989 - HP15_p187g115 0.77 +2.6 115,997 + HP15_p187g115 0.78 -0.3 115,997 + HP15_p187g115 0.78 -0.8 115,997 + HP15_p187g115 0.78 -0.7 115,997 + HP15_p187g115 0.78 -0.8 115,997 + HP15_p187g115 0.78 +0.3 116,005 - HP15_p187g115 0.78 +0.2 116,005 - HP15_p187g115 0.78 +0.4 116,005 - HP15_p187g115 0.78 -0.8 116,005 - HP15_p187g115 0.78 +0.1 116,006 + HP15_p187g115 0.78 +1.7 116,006 + HP15_p187g115 0.78 +1.3 116,104 + HP15_p187g115 0.83 -1.1 116,107 - HP15_p187g115 0.83 +1.2 116,121 + HP15_p187g115 0.84 +0.3 116,129 - HP15_p187g115 0.84 +1.1 116,159 - HP15_p187g115 0.86 +0.1 116,199 - HP15_p187g115 0.88 +0.3 116,200 + HP15_p187g115 0.88 +0.7 116,200 + HP15_p187g115 0.88 -0.2 116,243 - -0.6 116,273 + -0.4 116,273 + +0.8 116,281 - +0.2 116,281 - -1.4 116,281 - -0.3 116,283 + +0.9 116,283 + +1.1 116,286 - +2.9 116,286 - -0.7 116,286 - -0.8 116,291 - +0.4 116,298 + +1.0 116,312 + +2.0 116,312 + -1.4 116,314 + -0.8 116,317 + +0.2 116,320 - +0.0 116,320 - +0.3 116,320 - -0.8 116,322 + -1.0 116,324 + -1.1 116,324 + +0.8 116,325 - +0.0 116,325 - -1.1 116,332 - +0.6 116,332 - +1.3 116,361 + -1.9 116,381 + -0.5 116,382 + +1.5 116,398 + +0.1 116,429 + +0.0 116,472 + +2.0 116,487 - -0.2 116,508 - +0.1 116,508 - -0.2 116,515 + -2.2 116,517 - -1.0 116,540 - +1.7 116,544 + -0.8 116,546 - -0.5 116,546 - +1.1 116,546 - +0.1 116,552 - -1.2 116,555 + +1.2 116,563 - -2.1 116,563 - -2.7 116,579 - +0.6 116,607 - -1.3 116,686 + HP15_p187g116 0.23 -1.6 116,702 - HP15_p187g116 0.26 -0.1 116,712 + HP15_p187g116 0.28 +1.0 116,712 + HP15_p187g116 0.28 +3.3 116,718 + HP15_p187g116 0.29 +0.5 116,720 - HP15_p187g116 0.30 +1.3 116,738 + HP15_p187g116 0.34 -1.1 116,746 - HP15_p187g116 0.35 +1.2 116,773 + HP15_p187g116 0.41 +1.1 116,874 + HP15_p187g116 0.61 +1.8 116,936 - HP15_p187g116 0.74 -0.6 117,086 - +0.5 117,103 - -0.9 117,139 + -2.6 117,147 - +0.9 117,147 - +0.6 117,147 - -0.4 117,147 - +1.0 117,173 + -0.5 117,205 + -0.5 117,225 - +2.0 117,294 + -0.4 117,303 - -0.5 117,313 - -0.7 117,383 - -1.2 117,428 + -0.5 117,453 + -0.9 117,494 + -1.8 117,500 - -0.3 117,517 + +2.7 117,613 - +0.1 117,665 + HP15_p187g117 0.11 +1.3 117,706 + HP15_p187g117 0.14 +1.1 117,714 - HP15_p187g117 0.14 +2.9 117,716 + HP15_p187g117 0.15 -1.6 117,769 + HP15_p187g117 0.19 -0.4 117,775 + HP15_p187g117 0.19 -0.5 117,972 - HP15_p187g117 0.35 +0.0 117,982 - HP15_p187g117 0.36 +0.3 117,994 + HP15_p187g117 0.37 +1.0 117,994 + HP15_p187g117 0.37 +0.1 118,002 - HP15_p187g117 0.37 -1.3 118,002 - HP15_p187g117 0.37 -0.4 118,027 + HP15_p187g117 0.39 -1.7 118,027 + HP15_p187g117 0.39 +0.5 118,052 + HP15_p187g117 0.41 +0.0 118,052 + HP15_p187g117 0.41 +0.4 118,060 - HP15_p187g117 0.42 -0.2 118,060 - HP15_p187g117 0.42 -0.4
Or see this region's nucleotide sequence