Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g17

Experiment: m.b. Paraquat dichloride 0.0075 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g14 and HP15_p187g15 overlap by 4 nucleotidesHP15_p187g15 and HP15_p187g16 overlap by 1 nucleotidesHP15_p187g16 and HP15_p187g17 are separated by 23 nucleotidesHP15_p187g17 and HP15_p187g18 are separated by 80 nucleotidesHP15_p187g18 and HP15_p187g19 are separated by 509 nucleotides HP15_p187g14: HP15_p187g14 - protein containing sporulation stage II, protein E C-terminal domain, at 12,263 to 14,635 _p187g14 HP15_p187g15: HP15_p187g15 - serine phosphatase RsbU-like protein, regulator of sigma, at 14,632 to 15,051 _p187g15 HP15_p187g16: HP15_p187g16 - anti-sigma F factor antagonist, at 15,051 to 15,416 _p187g16 HP15_p187g17: HP15_p187g17 - conserved hypothetical protein, at 15,440 to 15,838 _p187g17 HP15_p187g18: HP15_p187g18 - hypothetical protein, at 15,919 to 16,161 _p187g18 HP15_p187g19: HP15_p187g19 - deoxyribodipyrimidine photolyase, at 16,671 to 18,188 _p187g19 Position (kb) 15 16Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 14.491 kb on + strandat 14.491 kb on + strandat 14.526 kb on - strandat 14.584 kb on - strandat 14.609 kb on + strandat 14.617 kb on - strandat 14.636 kb on + strandat 14.749 kb on + strand, within HP15_p187g15at 14.859 kb on + strand, within HP15_p187g15at 14.870 kb on + strand, within HP15_p187g15at 14.992 kb on + strand, within HP15_p187g15at 15.002 kb on - strand, within HP15_p187g15at 15.083 kb on + strandat 15.096 kb on + strand, within HP15_p187g16at 15.113 kb on - strand, within HP15_p187g16at 15.140 kb on + strand, within HP15_p187g16at 15.175 kb on + strand, within HP15_p187g16at 15.228 kb on + strand, within HP15_p187g16at 15.266 kb on + strand, within HP15_p187g16at 15.274 kb on - strand, within HP15_p187g16at 15.274 kb on - strand, within HP15_p187g16at 15.336 kb on - strand, within HP15_p187g16at 15.411 kb on + strandat 15.419 kb on - strandat 15.432 kb on + strandat 15.433 kb on - strandat 15.463 kb on - strandat 15.467 kb on + strandat 15.545 kb on + strand, within HP15_p187g17at 15.610 kb on - strand, within HP15_p187g17at 15.610 kb on - strand, within HP15_p187g17at 15.617 kb on + strand, within HP15_p187g17at 15.631 kb on - strand, within HP15_p187g17at 15.639 kb on - strand, within HP15_p187g17at 15.653 kb on - strand, within HP15_p187g17at 15.713 kb on + strand, within HP15_p187g17at 15.713 kb on + strand, within HP15_p187g17at 15.715 kb on + strand, within HP15_p187g17at 15.741 kb on - strand, within HP15_p187g17at 15.882 kb on + strandat 15.961 kb on - strand, within HP15_p187g18at 15.979 kb on - strand, within HP15_p187g18at 15.979 kb on - strand, within HP15_p187g18at 15.981 kb on + strand, within HP15_p187g18at 16.029 kb on + strand, within HP15_p187g18at 16.029 kb on + strand, within HP15_p187g18at 16.029 kb on + strand, within HP15_p187g18at 16.029 kb on + strand, within HP15_p187g18at 16.029 kb on + strand, within HP15_p187g18at 16.037 kb on - strand, within HP15_p187g18at 16.037 kb on - strand, within HP15_p187g18at 16.037 kb on - strand, within HP15_p187g18at 16.037 kb on - strand, within HP15_p187g18at 16.041 kb on + strand, within HP15_p187g18at 16.041 kb on + strand, within HP15_p187g18at 16.049 kb on - strand, within HP15_p187g18at 16.051 kb on + strand, within HP15_p187g18at 16.081 kb on - strand, within HP15_p187g18at 16.127 kb on - strand, within HP15_p187g18at 16.186 kb on - strandat 16.245 kb on + strandat 16.253 kb on - strandat 16.253 kb on - strandat 16.270 kb on + strandat 16.271 kb on + strandat 16.276 kb on + strandat 16.359 kb on + strandat 16.388 kb on + strandat 16.396 kb on - strandat 16.410 kb on - strandat 16.472 kb on - strandat 16.539 kb on - strandat 16.569 kb on - strandat 16.597 kb on + strandat 16.597 kb on + strandat 16.612 kb on + strandat 16.612 kb on + strandat 16.620 kb on - strandat 16.674 kb on - strandat 16.711 kb on + strandat 16.740 kb on - strandat 16.761 kb on + strandat 16.761 kb on + strandat 16.811 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml
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14,491 + +1.1
14,491 + -1.4
14,526 - -0.5
14,584 - -0.9
14,609 + +0.8
14,617 - -1.5
14,636 + +0.2
14,749 + HP15_p187g15 0.28 -0.5
14,859 + HP15_p187g15 0.54 +1.2
14,870 + HP15_p187g15 0.57 +0.6
14,992 + HP15_p187g15 0.86 +4.6
15,002 - HP15_p187g15 0.88 +0.0
15,083 + +0.1
15,096 + HP15_p187g16 0.12 +2.0
15,113 - HP15_p187g16 0.17 +0.2
15,140 + HP15_p187g16 0.24 -1.0
15,175 + HP15_p187g16 0.34 -0.7
15,228 + HP15_p187g16 0.48 -0.8
15,266 + HP15_p187g16 0.59 +2.4
15,274 - HP15_p187g16 0.61 +1.7
15,274 - HP15_p187g16 0.61 +0.1
15,336 - HP15_p187g16 0.78 -1.1
15,411 + +1.9
15,419 - +2.8
15,432 + -2.3
15,433 - +0.5
15,463 - +0.6
15,467 + +0.8
15,545 + HP15_p187g17 0.26 -1.2
15,610 - HP15_p187g17 0.43 +0.6
15,610 - HP15_p187g17 0.43 +1.6
15,617 + HP15_p187g17 0.44 +0.2
15,631 - HP15_p187g17 0.48 -0.1
15,639 - HP15_p187g17 0.50 -0.6
15,653 - HP15_p187g17 0.53 -1.2
15,713 + HP15_p187g17 0.68 +0.1
15,713 + HP15_p187g17 0.68 -1.1
15,715 + HP15_p187g17 0.69 -2.2
15,741 - HP15_p187g17 0.75 -1.2
15,882 + +1.9
15,961 - HP15_p187g18 0.17 +1.7
15,979 - HP15_p187g18 0.25 +1.4
15,979 - HP15_p187g18 0.25 +1.3
15,981 + HP15_p187g18 0.26 +4.4
16,029 + HP15_p187g18 0.45 +1.7
16,029 + HP15_p187g18 0.45 +2.9
16,029 + HP15_p187g18 0.45 +2.0
16,029 + HP15_p187g18 0.45 +2.6
16,029 + HP15_p187g18 0.45 +3.0
16,037 - HP15_p187g18 0.49 -1.3
16,037 - HP15_p187g18 0.49 -0.1
16,037 - HP15_p187g18 0.49 +1.2
16,037 - HP15_p187g18 0.49 +1.0
16,041 + HP15_p187g18 0.50 +0.4
16,041 + HP15_p187g18 0.50 +3.6
16,049 - HP15_p187g18 0.53 +1.5
16,051 + HP15_p187g18 0.54 +1.0
16,081 - HP15_p187g18 0.67 +1.3
16,127 - HP15_p187g18 0.86 +1.2
16,186 - -0.2
16,245 + +0.8
16,253 - +0.5
16,253 - -0.8
16,270 + +1.3
16,271 + +2.0
16,276 + -0.7
16,359 + +0.3
16,388 + +0.1
16,396 - +0.3
16,410 - +0.1
16,472 - +1.9
16,539 - -1.9
16,569 - -0.7
16,597 + +0.4
16,597 + +0.3
16,612 + -0.6
16,612 + +1.0
16,620 - +0.8
16,674 - -1.1
16,711 + +0.0
16,740 - -2.0
16,761 + -0.1
16,761 + +1.3
16,811 - -1.7

Or see this region's nucleotide sequence