Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3928 and HP15_3929 are separated by 10 nucleotides HP15_3929 and HP15_3930 are separated by 39 nucleotides HP15_3930 and HP15_3931 are separated by 25 nucleotides HP15_3931 and HP15_3932 are separated by 72 nucleotides
HP15_3928: HP15_3928 - acyl-CoA dehydrogenase domain protein, at 4,157,502 to 4,158,638
_3928
HP15_3929: HP15_3929 - acyl-CoA dehydrogenase domain protein, at 4,158,649 to 4,159,845
_3929
HP15_3930: HP15_3930 - putative two component system response regulator, at 4,159,885 to 4,160,151
_3930
HP15_3931: HP15_3931 - hypothetical protein, at 4,160,177 to 4,160,458
_3931
HP15_3932: HP15_3932 - CBS domain containing protein, at 4,160,531 to 4,161,130
_3932
Position (kb)
4158
4159
4160 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4157.687 kb on - strand, within HP15_3928 at 4157.854 kb on - strand, within HP15_3928 at 4157.856 kb on + strand, within HP15_3928 at 4157.863 kb on - strand, within HP15_3928 at 4157.868 kb on + strand, within HP15_3928 at 4157.874 kb on + strand, within HP15_3928 at 4157.882 kb on - strand, within HP15_3928 at 4157.887 kb on - strand, within HP15_3928 at 4157.889 kb on + strand, within HP15_3928 at 4157.952 kb on + strand, within HP15_3928 at 4157.975 kb on + strand, within HP15_3928 at 4157.983 kb on + strand, within HP15_3928 at 4157.991 kb on - strand, within HP15_3928 at 4158.046 kb on + strand, within HP15_3928 at 4158.046 kb on + strand, within HP15_3928 at 4158.069 kb on - strand, within HP15_3928 at 4158.186 kb on + strand, within HP15_3928 at 4158.431 kb on - strand, within HP15_3928 at 4158.488 kb on - strand, within HP15_3928 at 4158.493 kb on - strand, within HP15_3928 at 4158.540 kb on + strand at 4158.557 kb on + strand at 4158.565 kb on - strand at 4158.597 kb on + strand at 4158.648 kb on + strand at 4158.787 kb on + strand, within HP15_3929 at 4158.844 kb on + strand, within HP15_3929 at 4158.975 kb on - strand, within HP15_3929 at 4159.007 kb on - strand, within HP15_3929 at 4159.021 kb on - strand, within HP15_3929 at 4159.023 kb on + strand, within HP15_3929 at 4159.090 kb on + strand, within HP15_3929 at 4159.141 kb on + strand, within HP15_3929 at 4159.141 kb on + strand, within HP15_3929 at 4159.142 kb on + strand, within HP15_3929 at 4159.149 kb on - strand, within HP15_3929 at 4159.150 kb on - strand, within HP15_3929 at 4159.179 kb on - strand, within HP15_3929 at 4159.228 kb on + strand, within HP15_3929 at 4159.257 kb on + strand, within HP15_3929 at 4159.356 kb on + strand, within HP15_3929 at 4159.364 kb on - strand, within HP15_3929 at 4159.415 kb on + strand, within HP15_3929 at 4159.437 kb on + strand, within HP15_3929 at 4159.437 kb on + strand, within HP15_3929 at 4159.437 kb on + strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.460 kb on + strand, within HP15_3929 at 4159.463 kb on - strand, within HP15_3929 at 4159.470 kb on + strand, within HP15_3929 at 4159.482 kb on - strand, within HP15_3929 at 4159.613 kb on + strand, within HP15_3929 at 4159.654 kb on + strand, within HP15_3929 at 4159.659 kb on - strand, within HP15_3929 at 4159.745 kb on + strand at 4159.745 kb on + strand at 4159.745 kb on + strand at 4159.745 kb on + strand at 4159.753 kb on - strand at 4159.753 kb on - strand at 4159.753 kb on - strand at 4159.793 kb on + strand at 4160.059 kb on - strand, within HP15_3930 at 4160.086 kb on - strand, within HP15_3930 at 4160.114 kb on + strand, within HP15_3930 at 4160.190 kb on + strand at 4160.193 kb on - strand at 4160.260 kb on + strand, within HP15_3931 at 4160.426 kb on + strand, within HP15_3931 at 4160.461 kb on - strand at 4160.590 kb on - strand at 4160.600 kb on + strand, within HP15_3932 at 4160.702 kb on + strand, within HP15_3932 at 4160.814 kb on + strand, within HP15_3932 at 4160.839 kb on + strand, within HP15_3932 at 4160.839 kb on + strand, within HP15_3932
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 4,157,687 - HP15_3928 0.16 -0.1 4,157,854 - HP15_3928 0.31 +2.0 4,157,856 + HP15_3928 0.31 +3.6 4,157,863 - HP15_3928 0.32 +1.3 4,157,868 + HP15_3928 0.32 +2.8 4,157,874 + HP15_3928 0.33 -0.8 4,157,882 - HP15_3928 0.33 +0.2 4,157,887 - HP15_3928 0.34 -0.0 4,157,889 + HP15_3928 0.34 +0.8 4,157,952 + HP15_3928 0.40 +0.5 4,157,975 + HP15_3928 0.42 +0.9 4,157,983 + HP15_3928 0.42 +0.9 4,157,991 - HP15_3928 0.43 +3.6 4,158,046 + HP15_3928 0.48 +1.8 4,158,046 + HP15_3928 0.48 +0.3 4,158,069 - HP15_3928 0.50 +1.4 4,158,186 + HP15_3928 0.60 +0.7 4,158,431 - HP15_3928 0.82 +1.6 4,158,488 - HP15_3928 0.87 -0.0 4,158,493 - HP15_3928 0.87 -0.3 4,158,540 + +0.2 4,158,557 + -0.1 4,158,565 - -0.7 4,158,597 + +2.9 4,158,648 + -1.2 4,158,787 + HP15_3929 0.12 +2.6 4,158,844 + HP15_3929 0.16 +1.5 4,158,975 - HP15_3929 0.27 +1.9 4,159,007 - HP15_3929 0.30 -1.3 4,159,021 - HP15_3929 0.31 +2.6 4,159,023 + HP15_3929 0.31 +2.0 4,159,090 + HP15_3929 0.37 +1.3 4,159,141 + HP15_3929 0.41 -0.8 4,159,141 + HP15_3929 0.41 +2.0 4,159,142 + HP15_3929 0.41 +1.0 4,159,149 - HP15_3929 0.42 +1.6 4,159,150 - HP15_3929 0.42 +1.0 4,159,179 - HP15_3929 0.44 +1.2 4,159,228 + HP15_3929 0.48 +0.1 4,159,257 + HP15_3929 0.51 -0.7 4,159,356 + HP15_3929 0.59 +0.1 4,159,364 - HP15_3929 0.60 -0.2 4,159,415 + HP15_3929 0.64 -0.8 4,159,437 + HP15_3929 0.66 +0.4 4,159,437 + HP15_3929 0.66 +0.8 4,159,437 + HP15_3929 0.66 +1.4 4,159,445 - HP15_3929 0.66 +0.1 4,159,445 - HP15_3929 0.66 +1.0 4,159,445 - HP15_3929 0.66 +0.7 4,159,445 - HP15_3929 0.66 +1.0 4,159,445 - HP15_3929 0.66 -1.4 4,159,460 + HP15_3929 0.68 +0.2 4,159,463 - HP15_3929 0.68 +2.0 4,159,470 + HP15_3929 0.69 -0.2 4,159,482 - HP15_3929 0.70 +0.6 4,159,613 + HP15_3929 0.81 +0.7 4,159,654 + HP15_3929 0.84 +0.3 4,159,659 - HP15_3929 0.84 +1.6 4,159,745 + +1.0 4,159,745 + -1.6 4,159,745 + +0.4 4,159,745 + +2.2 4,159,753 - +0.9 4,159,753 - +1.5 4,159,753 - +1.5 4,159,793 + +1.2 4,160,059 - HP15_3930 0.65 -0.6 4,160,086 - HP15_3930 0.75 -3.4 4,160,114 + HP15_3930 0.86 +1.0 4,160,190 + +2.6 4,160,193 - -1.1 4,160,260 + HP15_3931 0.29 +0.4 4,160,426 + HP15_3931 0.88 +0.2 4,160,461 - -1.0 4,160,590 - -0.2 4,160,600 + HP15_3932 0.12 -0.4 4,160,702 + HP15_3932 0.28 -0.2 4,160,814 + HP15_3932 0.47 -0.9 4,160,839 + HP15_3932 0.51 +0.8 4,160,839 + HP15_3932 0.51 +0.5
Or see this region's nucleotide sequence