Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3921 and HP15_3922 are separated by 434 nucleotides HP15_3922 and HP15_3923 are separated by 57 nucleotides HP15_3923 and HP15_3924 are separated by 37 nucleotides HP15_3924 and HP15_3925 are separated by 152 nucleotides
HP15_3921: HP15_3921 - extracellular solute-binding protein, family 7, bacteria, at 4,149,876 to 4,150,922
_3921
HP15_3922: HP15_3922 - protein containing phenylacetic acid degradation-related protein domain, at 4,151,357 to 4,151,797
_3922
HP15_3923: HP15_3923 - acyl-CoA dehydrogenase family protein, at 4,151,855 to 4,153,057
_3923
HP15_3924: HP15_3924 - short-chain dehydrogenase/reductase SDR, at 4,153,095 to 4,153,862
_3924
HP15_3925: HP15_3925 - phosphotransferase enzyme family protein, at 4,154,015 to 4,155,079
_3925
Position (kb)
4151
4152
4153
4154 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 4150.878 kb on + strand at 4150.886 kb on - strand at 4150.906 kb on + strand at 4151.106 kb on + strand at 4151.117 kb on - strand at 4151.149 kb on - strand at 4151.340 kb on + strand at 4151.463 kb on + strand, within HP15_3922 at 4151.463 kb on + strand, within HP15_3922 at 4151.482 kb on - strand, within HP15_3922 at 4151.516 kb on + strand, within HP15_3922 at 4151.524 kb on - strand, within HP15_3922 at 4151.526 kb on - strand, within HP15_3922 at 4151.686 kb on + strand, within HP15_3922 at 4151.692 kb on - strand, within HP15_3922 at 4151.694 kb on + strand, within HP15_3922 at 4151.708 kb on + strand, within HP15_3922 at 4151.786 kb on + strand at 4151.874 kb on + strand at 4151.874 kb on - strand at 4151.915 kb on + strand at 4151.961 kb on - strand at 4152.013 kb on + strand, within HP15_3923 at 4152.031 kb on + strand, within HP15_3923 at 4152.040 kb on + strand, within HP15_3923 at 4152.063 kb on + strand, within HP15_3923 at 4152.097 kb on - strand, within HP15_3923 at 4152.165 kb on + strand, within HP15_3923 at 4152.287 kb on - strand, within HP15_3923 at 4152.471 kb on + strand, within HP15_3923 at 4152.551 kb on - strand, within HP15_3923 at 4152.564 kb on - strand, within HP15_3923 at 4152.600 kb on + strand, within HP15_3923 at 4152.605 kb on + strand, within HP15_3923 at 4152.657 kb on + strand, within HP15_3923 at 4152.670 kb on - strand, within HP15_3923 at 4152.712 kb on - strand, within HP15_3923 at 4152.765 kb on + strand, within HP15_3923 at 4152.787 kb on - strand, within HP15_3923 at 4152.791 kb on - strand, within HP15_3923 at 4152.820 kb on - strand, within HP15_3923 at 4152.843 kb on - strand, within HP15_3923 at 4152.896 kb on - strand, within HP15_3923 at 4152.917 kb on + strand, within HP15_3923 at 4152.924 kb on + strand, within HP15_3923 at 4152.927 kb on + strand, within HP15_3923 at 4152.935 kb on - strand, within HP15_3923 at 4153.032 kb on + strand at 4153.066 kb on + strand at 4153.074 kb on - strand at 4153.224 kb on + strand, within HP15_3924 at 4153.231 kb on + strand, within HP15_3924 at 4153.268 kb on - strand, within HP15_3924 at 4153.303 kb on + strand, within HP15_3924 at 4153.352 kb on - strand, within HP15_3924 at 4153.352 kb on - strand, within HP15_3924 at 4153.360 kb on + strand, within HP15_3924 at 4153.367 kb on + strand, within HP15_3924 at 4153.368 kb on - strand, within HP15_3924 at 4153.459 kb on + strand, within HP15_3924 at 4153.462 kb on + strand, within HP15_3924 at 4153.485 kb on - strand, within HP15_3924 at 4153.485 kb on - strand, within HP15_3924 at 4153.495 kb on - strand, within HP15_3924 at 4153.576 kb on + strand, within HP15_3924 at 4153.586 kb on - strand, within HP15_3924 at 4153.588 kb on - strand, within HP15_3924 at 4153.599 kb on + strand, within HP15_3924 at 4153.599 kb on + strand, within HP15_3924 at 4153.607 kb on - strand, within HP15_3924 at 4153.670 kb on + strand, within HP15_3924 at 4153.688 kb on - strand, within HP15_3924 at 4153.704 kb on + strand, within HP15_3924 at 4153.816 kb on + strand at 4153.817 kb on - strand at 4153.969 kb on + strand at 4154.025 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 4,150,878 + +3.6 4,150,886 - -1.0 4,150,906 + -1.1 4,151,106 + +0.2 4,151,117 - +1.3 4,151,149 - +0.5 4,151,340 + -1.6 4,151,463 + HP15_3922 0.24 -0.4 4,151,463 + HP15_3922 0.24 +2.0 4,151,482 - HP15_3922 0.28 +0.7 4,151,516 + HP15_3922 0.36 -1.1 4,151,524 - HP15_3922 0.38 -1.0 4,151,526 - HP15_3922 0.38 +1.1 4,151,686 + HP15_3922 0.75 +0.5 4,151,692 - HP15_3922 0.76 -0.0 4,151,694 + HP15_3922 0.76 +0.2 4,151,708 + HP15_3922 0.80 -0.4 4,151,786 + +0.7 4,151,874 + -0.0 4,151,874 - +1.0 4,151,915 + +1.9 4,151,961 - +1.1 4,152,013 + HP15_3923 0.13 -0.6 4,152,031 + HP15_3923 0.15 -1.6 4,152,040 + HP15_3923 0.15 -1.3 4,152,063 + HP15_3923 0.17 +0.2 4,152,097 - HP15_3923 0.20 +1.6 4,152,165 + HP15_3923 0.26 -1.8 4,152,287 - HP15_3923 0.36 +1.0 4,152,471 + HP15_3923 0.51 -0.9 4,152,551 - HP15_3923 0.58 -0.3 4,152,564 - HP15_3923 0.59 +2.0 4,152,600 + HP15_3923 0.62 +1.8 4,152,605 + HP15_3923 0.62 -1.4 4,152,657 + HP15_3923 0.67 +0.1 4,152,670 - HP15_3923 0.68 -0.5 4,152,712 - HP15_3923 0.71 +0.3 4,152,765 + HP15_3923 0.76 +2.0 4,152,787 - HP15_3923 0.77 -0.2 4,152,791 - HP15_3923 0.78 -1.0 4,152,820 - HP15_3923 0.80 +0.0 4,152,843 - HP15_3923 0.82 -1.1 4,152,896 - HP15_3923 0.87 +8.3 4,152,917 + HP15_3923 0.88 +1.2 4,152,924 + HP15_3923 0.89 +0.2 4,152,927 + HP15_3923 0.89 +0.6 4,152,935 - HP15_3923 0.90 +0.6 4,153,032 + +0.4 4,153,066 + +0.9 4,153,074 - -0.6 4,153,224 + HP15_3924 0.17 +0.7 4,153,231 + HP15_3924 0.18 -1.2 4,153,268 - HP15_3924 0.23 +0.5 4,153,303 + HP15_3924 0.27 -1.9 4,153,352 - HP15_3924 0.33 +0.6 4,153,352 - HP15_3924 0.33 +0.6 4,153,360 + HP15_3924 0.35 +1.5 4,153,367 + HP15_3924 0.35 +0.9 4,153,368 - HP15_3924 0.36 -0.8 4,153,459 + HP15_3924 0.47 -0.5 4,153,462 + HP15_3924 0.48 -0.1 4,153,485 - HP15_3924 0.51 +0.4 4,153,485 - HP15_3924 0.51 -3.2 4,153,495 - HP15_3924 0.52 +0.8 4,153,576 + HP15_3924 0.63 +0.3 4,153,586 - HP15_3924 0.64 -0.1 4,153,588 - HP15_3924 0.64 -0.1 4,153,599 + HP15_3924 0.66 +0.7 4,153,599 + HP15_3924 0.66 -0.2 4,153,607 - HP15_3924 0.67 +0.5 4,153,670 + HP15_3924 0.75 -0.8 4,153,688 - HP15_3924 0.77 -1.4 4,153,704 + HP15_3924 0.79 +0.5 4,153,816 + -0.8 4,153,817 - -0.7 4,153,969 + +0.2 4,154,025 + +0.1
Or see this region's nucleotide sequence