Strain Fitness in Marinobacter adhaerens HP15 around HP15_3730

Experiment: m.b. Paraquat dichloride 0.0075 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3729 and HP15_3730 are separated by 22 nucleotidesHP15_3730 and HP15_3731 are separated by 135 nucleotides HP15_3729: HP15_3729 - sensory box/GGDEF family protein, at 3,948,781 to 3,950,835 _3729 HP15_3730: HP15_3730 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 3,950,858 to 3,952,411 _3730 HP15_3731: HP15_3731 - sulfide-quinone reductase, at 3,952,547 to 3,953,815 _3731 Position (kb) 3950 3951 3952 3953Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3949.860 kb on + strand, within HP15_3729at 3949.868 kb on - strand, within HP15_3729at 3949.868 kb on - strand, within HP15_3729at 3949.985 kb on + strand, within HP15_3729at 3950.059 kb on + strand, within HP15_3729at 3950.067 kb on - strand, within HP15_3729at 3950.169 kb on + strand, within HP15_3729at 3950.188 kb on + strand, within HP15_3729at 3950.231 kb on - strand, within HP15_3729at 3950.248 kb on - strand, within HP15_3729at 3950.253 kb on - strand, within HP15_3729at 3950.253 kb on - strand, within HP15_3729at 3950.262 kb on - strand, within HP15_3729at 3950.283 kb on - strand, within HP15_3729at 3950.320 kb on - strand, within HP15_3729at 3950.347 kb on + strand, within HP15_3729at 3950.466 kb on - strand, within HP15_3729at 3950.475 kb on - strand, within HP15_3729at 3950.565 kb on - strand, within HP15_3729at 3950.623 kb on + strand, within HP15_3729at 3950.640 kb on - strandat 3950.672 kb on + strandat 3950.672 kb on + strandat 3950.757 kb on - strandat 3950.798 kb on + strandat 3950.811 kb on - strandat 3950.828 kb on - strandat 3950.844 kb on + strandat 3950.844 kb on + strandat 3950.852 kb on - strandat 3950.853 kb on - strandat 3950.853 kb on - strandat 3950.853 kb on - strandat 3950.859 kb on - strandat 3950.867 kb on + strandat 3950.875 kb on - strandat 3950.940 kb on + strandat 3950.997 kb on + strandat 3950.998 kb on - strandat 3951.005 kb on - strandat 3951.075 kb on + strand, within HP15_3730at 3951.075 kb on + strand, within HP15_3730at 3951.116 kb on + strand, within HP15_3730at 3951.195 kb on + strand, within HP15_3730at 3951.229 kb on + strand, within HP15_3730at 3951.245 kb on - strand, within HP15_3730at 3951.288 kb on - strand, within HP15_3730at 3951.426 kb on + strand, within HP15_3730at 3951.427 kb on + strand, within HP15_3730at 3951.427 kb on + strand, within HP15_3730at 3951.434 kb on - strand, within HP15_3730at 3951.453 kb on - strand, within HP15_3730at 3951.473 kb on + strand, within HP15_3730at 3951.556 kb on - strand, within HP15_3730at 3951.557 kb on + strand, within HP15_3730at 3951.588 kb on + strand, within HP15_3730at 3951.596 kb on - strand, within HP15_3730at 3951.596 kb on - strand, within HP15_3730at 3951.677 kb on + strand, within HP15_3730at 3951.679 kb on + strand, within HP15_3730at 3951.685 kb on - strand, within HP15_3730at 3951.687 kb on - strand, within HP15_3730at 3951.697 kb on - strand, within HP15_3730at 3951.718 kb on - strand, within HP15_3730at 3951.727 kb on - strand, within HP15_3730at 3951.800 kb on + strand, within HP15_3730at 3951.808 kb on - strand, within HP15_3730at 3951.851 kb on + strand, within HP15_3730at 3951.866 kb on + strand, within HP15_3730at 3952.125 kb on - strand, within HP15_3730at 3952.173 kb on + strand, within HP15_3730at 3952.173 kb on + strand, within HP15_3730at 3952.173 kb on + strand, within HP15_3730at 3952.173 kb on + strand, within HP15_3730at 3952.181 kb on - strand, within HP15_3730at 3952.181 kb on - strand, within HP15_3730at 3952.181 kb on - strand, within HP15_3730at 3952.181 kb on - strand, within HP15_3730at 3952.188 kb on + strand, within HP15_3730at 3952.196 kb on - strand, within HP15_3730at 3952.196 kb on - strand, within HP15_3730at 3952.337 kb on - strandat 3952.594 kb on - strandat 3952.601 kb on - strandat 3952.834 kb on + strand, within HP15_3731at 3952.900 kb on + strand, within HP15_3731at 3952.908 kb on - strand, within HP15_3731at 3952.908 kb on - strand, within HP15_3731at 3952.933 kb on + strand, within HP15_3731at 3952.983 kb on - strand, within HP15_3731at 3953.029 kb on + strand, within HP15_3731at 3953.089 kb on - strand, within HP15_3731at 3953.094 kb on - strand, within HP15_3731at 3953.124 kb on - strand, within HP15_3731at 3953.171 kb on - strand, within HP15_3731at 3953.213 kb on - strand, within HP15_3731at 3953.213 kb on - strand, within HP15_3731at 3953.245 kb on - strand, within HP15_3731at 3953.396 kb on + strand, within HP15_3731

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml
remove
3,949,860 + HP15_3729 0.53 +0.0
3,949,868 - HP15_3729 0.53 +1.4
3,949,868 - HP15_3729 0.53 -0.6
3,949,985 + HP15_3729 0.59 +0.0
3,950,059 + HP15_3729 0.62 +0.2
3,950,067 - HP15_3729 0.63 -0.3
3,950,169 + HP15_3729 0.68 +0.9
3,950,188 + HP15_3729 0.68 +1.4
3,950,231 - HP15_3729 0.71 -0.3
3,950,248 - HP15_3729 0.71 +1.1
3,950,253 - HP15_3729 0.72 -0.2
3,950,253 - HP15_3729 0.72 +0.4
3,950,262 - HP15_3729 0.72 +1.3
3,950,283 - HP15_3729 0.73 +1.6
3,950,320 - HP15_3729 0.75 +0.9
3,950,347 + HP15_3729 0.76 +0.2
3,950,466 - HP15_3729 0.82 +0.7
3,950,475 - HP15_3729 0.82 +0.4
3,950,565 - HP15_3729 0.87 +0.4
3,950,623 + HP15_3729 0.90 -0.2
3,950,640 - +0.1
3,950,672 + -1.2
3,950,672 + -0.1
3,950,757 - +0.8
3,950,798 + +0.6
3,950,811 - -0.8
3,950,828 - +1.3
3,950,844 + +2.0
3,950,844 + +1.6
3,950,852 - +0.7
3,950,853 - +0.7
3,950,853 - +0.2
3,950,853 - -0.5
3,950,859 - +0.5
3,950,867 + +0.3
3,950,875 - -0.2
3,950,940 + +3.6
3,950,997 + -0.5
3,950,998 - +0.4
3,951,005 - +1.0
3,951,075 + HP15_3730 0.14 -0.3
3,951,075 + HP15_3730 0.14 -0.6
3,951,116 + HP15_3730 0.17 +0.0
3,951,195 + HP15_3730 0.22 +0.2
3,951,229 + HP15_3730 0.24 +1.2
3,951,245 - HP15_3730 0.25 +1.4
3,951,288 - HP15_3730 0.28 +2.8
3,951,426 + HP15_3730 0.37 +0.2
3,951,427 + HP15_3730 0.37 +0.3
3,951,427 + HP15_3730 0.37 -0.5
3,951,434 - HP15_3730 0.37 -0.4
3,951,453 - HP15_3730 0.38 -0.9
3,951,473 + HP15_3730 0.40 +0.8
3,951,556 - HP15_3730 0.45 -1.7
3,951,557 + HP15_3730 0.45 +0.8
3,951,588 + HP15_3730 0.47 +2.6
3,951,596 - HP15_3730 0.47 -0.8
3,951,596 - HP15_3730 0.47 +0.7
3,951,677 + HP15_3730 0.53 +0.9
3,951,679 + HP15_3730 0.53 +1.8
3,951,685 - HP15_3730 0.53 +1.8
3,951,687 - HP15_3730 0.53 -0.2
3,951,697 - HP15_3730 0.54 +0.1
3,951,718 - HP15_3730 0.55 +3.6
3,951,727 - HP15_3730 0.56 -2.7
3,951,800 + HP15_3730 0.61 +0.6
3,951,808 - HP15_3730 0.61 -1.7
3,951,851 + HP15_3730 0.64 -0.2
3,951,866 + HP15_3730 0.65 -0.4
3,952,125 - HP15_3730 0.82 +1.0
3,952,173 + HP15_3730 0.85 -0.4
3,952,173 + HP15_3730 0.85 +1.1
3,952,173 + HP15_3730 0.85 -1.5
3,952,173 + HP15_3730 0.85 -0.2
3,952,181 - HP15_3730 0.85 +1.4
3,952,181 - HP15_3730 0.85 -1.4
3,952,181 - HP15_3730 0.85 +0.4
3,952,181 - HP15_3730 0.85 +1.0
3,952,188 + HP15_3730 0.86 -0.4
3,952,196 - HP15_3730 0.86 +1.7
3,952,196 - HP15_3730 0.86 -0.9
3,952,337 - +0.1
3,952,594 - +0.6
3,952,601 - -1.2
3,952,834 + HP15_3731 0.23 +0.2
3,952,900 + HP15_3731 0.28 +0.7
3,952,908 - HP15_3731 0.28 -1.2
3,952,908 - HP15_3731 0.28 -0.7
3,952,933 + HP15_3731 0.30 -0.8
3,952,983 - HP15_3731 0.34 +0.2
3,953,029 + HP15_3731 0.38 -1.2
3,953,089 - HP15_3731 0.43 -3.6
3,953,094 - HP15_3731 0.43 +0.2
3,953,124 - HP15_3731 0.45 +1.2
3,953,171 - HP15_3731 0.49 +1.0
3,953,213 - HP15_3731 0.52 -0.4
3,953,213 - HP15_3731 0.52 +0.4
3,953,245 - HP15_3731 0.55 -0.2
3,953,396 + HP15_3731 0.67 -0.7

Or see this region's nucleotide sequence