Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3651 and HP15_3652 are separated by 101 nucleotides HP15_3652 and HP15_3653 are separated by 15 nucleotides
HP15_3651: HP15_3651 - acetamidase/formamidase, at 3,845,639 to 3,846,871
_3651
HP15_3652: HP15_3652 - ATPase AAA-2 domain protein, at 3,846,973 to 3,848,016
_3652
HP15_3653: HP15_3653 - acylamide amidohydrolase, at 3,848,032 to 3,849,078
_3653
Position (kb)
3846
3847
3848
3849 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3845.988 kb on + strand, within HP15_3651 at 3846.141 kb on + strand, within HP15_3651 at 3846.144 kb on - strand, within HP15_3651 at 3846.144 kb on - strand, within HP15_3651 at 3846.144 kb on - strand, within HP15_3651 at 3846.177 kb on - strand, within HP15_3651 at 3846.283 kb on - strand, within HP15_3651 at 3846.300 kb on + strand, within HP15_3651 at 3846.300 kb on + strand, within HP15_3651 at 3846.350 kb on - strand, within HP15_3651 at 3846.375 kb on - strand, within HP15_3651 at 3846.407 kb on + strand, within HP15_3651 at 3846.521 kb on - strand, within HP15_3651 at 3846.614 kb on - strand, within HP15_3651 at 3846.625 kb on + strand, within HP15_3651 at 3846.659 kb on + strand, within HP15_3651 at 3846.679 kb on - strand, within HP15_3651 at 3846.774 kb on - strand at 3846.834 kb on + strand at 3846.839 kb on + strand at 3846.852 kb on - strand at 3846.890 kb on - strand at 3846.936 kb on + strand at 3846.936 kb on + strand at 3847.014 kb on - strand at 3847.048 kb on - strand at 3847.160 kb on - strand, within HP15_3652 at 3847.322 kb on - strand, within HP15_3652 at 3847.371 kb on + strand, within HP15_3652 at 3847.389 kb on + strand, within HP15_3652 at 3847.397 kb on - strand, within HP15_3652 at 3847.443 kb on - strand, within HP15_3652 at 3847.443 kb on - strand, within HP15_3652 at 3847.480 kb on + strand, within HP15_3652 at 3847.510 kb on - strand, within HP15_3652 at 3847.512 kb on - strand, within HP15_3652 at 3847.562 kb on + strand, within HP15_3652 at 3847.582 kb on + strand, within HP15_3652 at 3847.590 kb on - strand, within HP15_3652 at 3847.590 kb on - strand, within HP15_3652 at 3847.592 kb on - strand, within HP15_3652 at 3847.594 kb on + strand, within HP15_3652 at 3847.616 kb on - strand, within HP15_3652 at 3847.636 kb on + strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.664 kb on - strand, within HP15_3652 at 3847.674 kb on - strand, within HP15_3652 at 3847.778 kb on + strand, within HP15_3652 at 3847.834 kb on - strand, within HP15_3652 at 3847.877 kb on - strand, within HP15_3652 at 3847.942 kb on + strand at 3847.955 kb on - strand at 3848.022 kb on + strand at 3848.045 kb on + strand at 3848.148 kb on + strand, within HP15_3653 at 3848.172 kb on - strand, within HP15_3653 at 3848.186 kb on + strand, within HP15_3653 at 3848.194 kb on - strand, within HP15_3653 at 3848.205 kb on + strand, within HP15_3653 at 3848.212 kb on + strand, within HP15_3653 at 3848.220 kb on - strand, within HP15_3653 at 3848.228 kb on - strand, within HP15_3653 at 3848.228 kb on - strand, within HP15_3653 at 3848.305 kb on + strand, within HP15_3653 at 3848.315 kb on - strand, within HP15_3653 at 3848.331 kb on + strand, within HP15_3653 at 3848.455 kb on + strand, within HP15_3653 at 3848.463 kb on - strand, within HP15_3653 at 3848.501 kb on + strand, within HP15_3653 at 3848.508 kb on - strand, within HP15_3653 at 3848.531 kb on + strand, within HP15_3653 at 3848.608 kb on + strand, within HP15_3653 at 3848.608 kb on - strand, within HP15_3653 at 3848.718 kb on + strand, within HP15_3653 at 3848.786 kb on + strand, within HP15_3653 at 3848.792 kb on - strand, within HP15_3653 at 3848.794 kb on - strand, within HP15_3653 at 3848.913 kb on + strand, within HP15_3653 at 3848.948 kb on + strand, within HP15_3653 at 3848.980 kb on + strand at 3848.980 kb on + strand at 3848.988 kb on - strand at 3848.988 kb on - strand at 3848.988 kb on - strand at 3848.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 3,845,988 + HP15_3651 0.28 -0.4 3,846,141 + HP15_3651 0.41 -0.2 3,846,144 - HP15_3651 0.41 -0.4 3,846,144 - HP15_3651 0.41 -0.8 3,846,144 - HP15_3651 0.41 -0.4 3,846,177 - HP15_3651 0.44 +1.5 3,846,283 - HP15_3651 0.52 +0.1 3,846,300 + HP15_3651 0.54 -0.8 3,846,300 + HP15_3651 0.54 -0.6 3,846,350 - HP15_3651 0.58 -0.5 3,846,375 - HP15_3651 0.60 +0.3 3,846,407 + HP15_3651 0.62 -0.4 3,846,521 - HP15_3651 0.72 +1.9 3,846,614 - HP15_3651 0.79 +0.6 3,846,625 + HP15_3651 0.80 -0.4 3,846,659 + HP15_3651 0.83 -0.7 3,846,679 - HP15_3651 0.84 +4.9 3,846,774 - -0.6 3,846,834 + +1.9 3,846,839 + +0.5 3,846,852 - +0.1 3,846,890 - +0.0 3,846,936 + +0.0 3,846,936 + -1.3 3,847,014 - -1.1 3,847,048 - +0.8 3,847,160 - HP15_3652 0.18 +0.4 3,847,322 - HP15_3652 0.33 +0.1 3,847,371 + HP15_3652 0.38 +2.0 3,847,389 + HP15_3652 0.40 +0.9 3,847,397 - HP15_3652 0.41 -1.0 3,847,443 - HP15_3652 0.45 +0.4 3,847,443 - HP15_3652 0.45 -0.3 3,847,480 + HP15_3652 0.49 +0.4 3,847,510 - HP15_3652 0.51 +0.0 3,847,512 - HP15_3652 0.52 +0.8 3,847,562 + HP15_3652 0.56 -1.1 3,847,582 + HP15_3652 0.58 +1.3 3,847,590 - HP15_3652 0.59 -1.4 3,847,590 - HP15_3652 0.59 -0.5 3,847,592 - HP15_3652 0.59 +0.0 3,847,594 + HP15_3652 0.59 -0.2 3,847,616 - HP15_3652 0.62 +1.1 3,847,636 + HP15_3652 0.64 +0.6 3,847,659 - HP15_3652 0.66 -0.5 3,847,659 - HP15_3652 0.66 -0.8 3,847,659 - HP15_3652 0.66 -0.7 3,847,659 - HP15_3652 0.66 +2.5 3,847,659 - HP15_3652 0.66 +1.7 3,847,659 - HP15_3652 0.66 +0.2 3,847,664 - HP15_3652 0.66 +0.8 3,847,674 - HP15_3652 0.67 +1.2 3,847,778 + HP15_3652 0.77 +0.5 3,847,834 - HP15_3652 0.82 +1.1 3,847,877 - HP15_3652 0.87 -0.4 3,847,942 + -0.3 3,847,955 - +0.8 3,848,022 + -0.8 3,848,045 + -2.6 3,848,148 + HP15_3653 0.11 +0.1 3,848,172 - HP15_3653 0.13 +0.4 3,848,186 + HP15_3653 0.15 -1.6 3,848,194 - HP15_3653 0.15 -1.0 3,848,205 + HP15_3653 0.17 -0.5 3,848,212 + HP15_3653 0.17 -0.8 3,848,220 - HP15_3653 0.18 +0.8 3,848,228 - HP15_3653 0.19 +0.7 3,848,228 - HP15_3653 0.19 -1.0 3,848,305 + HP15_3653 0.26 -0.1 3,848,315 - HP15_3653 0.27 -0.9 3,848,331 + HP15_3653 0.29 +0.4 3,848,455 + HP15_3653 0.40 +1.9 3,848,463 - HP15_3653 0.41 +0.8 3,848,501 + HP15_3653 0.45 -0.5 3,848,508 - HP15_3653 0.45 +0.6 3,848,531 + HP15_3653 0.48 -1.0 3,848,608 + HP15_3653 0.55 +0.2 3,848,608 - HP15_3653 0.55 -0.2 3,848,718 + HP15_3653 0.66 -0.2 3,848,786 + HP15_3653 0.72 -0.5 3,848,792 - HP15_3653 0.73 +0.8 3,848,794 - HP15_3653 0.73 -0.2 3,848,913 + HP15_3653 0.84 +1.2 3,848,948 + HP15_3653 0.87 +5.2 3,848,980 + -1.0 3,848,980 + +0.0 3,848,988 - +0.2 3,848,988 - +1.3 3,848,988 - +0.1 3,848,988 - +0.5
Or see this region's nucleotide sequence