Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3607 and HP15_3608 are separated by 320 nucleotides HP15_3608 and HP15_3609 are separated by 40 nucleotides HP15_3609 and HP15_3610 are separated by 69 nucleotides
HP15_3607: HP15_3607 - DEAD/DEAH box helicase domain protein, at 3,802,798 to 3,804,120
_3607
HP15_3608: HP15_3608 - membrane protein containing redoxin domain, at 3,804,441 to 3,805,256
_3608
HP15_3609: HP15_3609 - secreted protein containing DUF302, at 3,805,297 to 3,805,752
_3609
HP15_3610: HP15_3610 - lipid A biosynthesis lauroyl acyltransferase, at 3,805,822 to 3,806,640
_3610
Position (kb)
3804
3805
3806 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 3803.511 kb on + strand, within HP15_3607 at 3803.531 kb on + strand, within HP15_3607 at 3803.665 kb on - strand, within HP15_3607 at 3803.693 kb on - strand, within HP15_3607 at 3803.728 kb on + strand, within HP15_3607 at 3803.757 kb on - strand, within HP15_3607 at 3803.764 kb on - strand, within HP15_3607 at 3803.803 kb on - strand, within HP15_3607 at 3803.805 kb on - strand, within HP15_3607 at 3803.806 kb on - strand, within HP15_3607 at 3803.851 kb on + strand, within HP15_3607 at 3803.851 kb on + strand, within HP15_3607 at 3803.851 kb on + strand, within HP15_3607 at 3803.859 kb on - strand, within HP15_3607 at 3803.859 kb on - strand, within HP15_3607 at 3803.859 kb on - strand, within HP15_3607 at 3803.871 kb on + strand, within HP15_3607 at 3803.891 kb on - strand, within HP15_3607 at 3803.924 kb on + strand, within HP15_3607 at 3803.931 kb on - strand, within HP15_3607 at 3803.947 kb on + strand, within HP15_3607 at 3803.953 kb on + strand, within HP15_3607 at 3803.980 kb on + strand, within HP15_3607 at 3804.001 kb on + strand at 3804.039 kb on + strand at 3804.066 kb on + strand at 3804.074 kb on - strand at 3804.074 kb on - strand at 3804.085 kb on - strand at 3804.085 kb on - strand at 3804.085 kb on - strand at 3804.282 kb on + strand at 3804.282 kb on + strand at 3804.290 kb on - strand at 3804.290 kb on - strand at 3804.308 kb on - strand at 3804.314 kb on - strand at 3804.329 kb on - strand at 3804.329 kb on - strand at 3804.329 kb on - strand at 3804.331 kb on + strand at 3804.459 kb on - strand at 3804.459 kb on - strand at 3804.500 kb on - strand at 3804.689 kb on + strand, within HP15_3608 at 3804.689 kb on + strand, within HP15_3608 at 3804.696 kb on + strand, within HP15_3608 at 3804.697 kb on - strand, within HP15_3608 at 3804.697 kb on - strand, within HP15_3608 at 3804.745 kb on - strand, within HP15_3608 at 3804.791 kb on + strand, within HP15_3608 at 3804.799 kb on - strand, within HP15_3608 at 3804.799 kb on - strand, within HP15_3608 at 3804.799 kb on - strand, within HP15_3608 at 3804.814 kb on + strand, within HP15_3608 at 3804.814 kb on + strand, within HP15_3608 at 3804.814 kb on + strand, within HP15_3608 at 3804.822 kb on - strand, within HP15_3608 at 3804.822 kb on - strand, within HP15_3608 at 3804.822 kb on - strand, within HP15_3608 at 3804.822 kb on - strand, within HP15_3608 at 3804.822 kb on - strand, within HP15_3608 at 3804.822 kb on - strand, within HP15_3608 at 3804.869 kb on + strand, within HP15_3608 at 3804.874 kb on + strand, within HP15_3608 at 3804.882 kb on + strand, within HP15_3608 at 3804.929 kb on + strand, within HP15_3608 at 3804.959 kb on - strand, within HP15_3608 at 3804.992 kb on - strand, within HP15_3608 at 3805.026 kb on - strand, within HP15_3608 at 3805.045 kb on - strand, within HP15_3608 at 3805.172 kb on - strand, within HP15_3608 at 3805.202 kb on + strand at 3805.217 kb on + strand at 3805.220 kb on - strand at 3805.253 kb on - strand at 3805.261 kb on + strand at 3805.363 kb on + strand, within HP15_3609 at 3805.420 kb on - strand, within HP15_3609 at 3805.461 kb on + strand, within HP15_3609 at 3805.469 kb on - strand, within HP15_3609 at 3805.505 kb on + strand, within HP15_3609 at 3805.645 kb on - strand, within HP15_3609 at 3805.713 kb on - strand at 3805.785 kb on + strand at 3805.790 kb on + strand at 3805.790 kb on + strand at 3805.818 kb on - strand at 3805.825 kb on + strand at 3805.833 kb on - strand at 3805.833 kb on - strand at 3806.067 kb on + strand, within HP15_3610 at 3806.149 kb on + strand, within HP15_3610 at 3806.152 kb on - strand, within HP15_3610 at 3806.188 kb on + strand, within HP15_3610 at 3806.191 kb on - strand, within HP15_3610 at 3806.196 kb on - strand, within HP15_3610
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 3,803,511 + HP15_3607 0.54 -1.0 3,803,531 + HP15_3607 0.55 +0.1 3,803,665 - HP15_3607 0.66 -1.0 3,803,693 - HP15_3607 0.68 +0.3 3,803,728 + HP15_3607 0.70 +0.7 3,803,757 - HP15_3607 0.72 +0.5 3,803,764 - HP15_3607 0.73 -0.3 3,803,803 - HP15_3607 0.76 +0.4 3,803,805 - HP15_3607 0.76 -0.0 3,803,806 - HP15_3607 0.76 +2.0 3,803,851 + HP15_3607 0.80 +1.0 3,803,851 + HP15_3607 0.80 +0.9 3,803,851 + HP15_3607 0.80 +1.0 3,803,859 - HP15_3607 0.80 +0.1 3,803,859 - HP15_3607 0.80 +1.3 3,803,859 - HP15_3607 0.80 +1.3 3,803,871 + HP15_3607 0.81 +2.1 3,803,891 - HP15_3607 0.83 +0.1 3,803,924 + HP15_3607 0.85 +2.4 3,803,931 - HP15_3607 0.86 +1.3 3,803,947 + HP15_3607 0.87 -0.5 3,803,953 + HP15_3607 0.87 -0.1 3,803,980 + HP15_3607 0.89 +1.0 3,804,001 + -0.2 3,804,039 + -0.2 3,804,066 + +1.4 3,804,074 - +0.4 3,804,074 - +0.0 3,804,085 - +0.8 3,804,085 - +0.0 3,804,085 - +2.1 3,804,282 + +2.6 3,804,282 + +0.5 3,804,290 - -2.5 3,804,290 - +1.4 3,804,308 - +0.1 3,804,314 - +3.3 3,804,329 - +0.7 3,804,329 - +6.8 3,804,329 - +0.8 3,804,331 + -0.4 3,804,459 - +1.0 3,804,459 - +0.3 3,804,500 - -1.2 3,804,689 + HP15_3608 0.30 +2.6 3,804,689 + HP15_3608 0.30 -0.2 3,804,696 + HP15_3608 0.31 +0.5 3,804,697 - HP15_3608 0.31 +1.1 3,804,697 - HP15_3608 0.31 +0.9 3,804,745 - HP15_3608 0.37 +3.1 3,804,791 + HP15_3608 0.43 +0.4 3,804,799 - HP15_3608 0.44 +0.8 3,804,799 - HP15_3608 0.44 -0.5 3,804,799 - HP15_3608 0.44 +0.4 3,804,814 + HP15_3608 0.46 +1.0 3,804,814 + HP15_3608 0.46 +1.4 3,804,814 + HP15_3608 0.46 -0.7 3,804,822 - HP15_3608 0.47 +1.7 3,804,822 - HP15_3608 0.47 +0.5 3,804,822 - HP15_3608 0.47 -0.5 3,804,822 - HP15_3608 0.47 -1.2 3,804,822 - HP15_3608 0.47 +1.0 3,804,822 - HP15_3608 0.47 -1.3 3,804,869 + HP15_3608 0.52 +2.0 3,804,874 + HP15_3608 0.53 +0.8 3,804,882 + HP15_3608 0.54 -2.3 3,804,929 + HP15_3608 0.60 +0.4 3,804,959 - HP15_3608 0.63 +0.3 3,804,992 - HP15_3608 0.68 -0.4 3,805,026 - HP15_3608 0.72 +1.4 3,805,045 - HP15_3608 0.74 -0.6 3,805,172 - HP15_3608 0.90 -0.1 3,805,202 + +0.6 3,805,217 + -0.0 3,805,220 - +0.4 3,805,253 - -0.5 3,805,261 + -1.5 3,805,363 + HP15_3609 0.14 -0.7 3,805,420 - HP15_3609 0.27 +0.2 3,805,461 + HP15_3609 0.36 +1.5 3,805,469 - HP15_3609 0.38 +0.6 3,805,505 + HP15_3609 0.46 -1.0 3,805,645 - HP15_3609 0.76 -0.5 3,805,713 - +0.5 3,805,785 + -0.4 3,805,790 + +2.6 3,805,790 + +0.1 3,805,818 - -0.8 3,805,825 + -0.0 3,805,833 - +0.1 3,805,833 - -1.1 3,806,067 + HP15_3610 0.30 +0.9 3,806,149 + HP15_3610 0.40 -0.3 3,806,152 - HP15_3610 0.40 -2.3 3,806,188 + HP15_3610 0.45 +2.2 3,806,191 - HP15_3610 0.45 +0.5 3,806,196 - HP15_3610 0.46 +0.2
Or see this region's nucleotide sequence