Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3501 and HP15_3502 are separated by 26 nucleotides HP15_3502 and HP15_3503 are separated by 3 nucleotides HP15_3503 and HP15_3504 are separated by 51 nucleotides HP15_3504 and HP15_3505 are separated by 42 nucleotides
HP15_3501: HP15_3501 - integral membrane protein, possible transporter, at 3,685,058 to 3,687,121
_3501
HP15_3502: HP15_3502 - conserved hypothetical protein, at 3,687,148 to 3,688,092
_3502
HP15_3503: HP15_3503 - hypothetical protein, at 3,688,096 to 3,688,455
_3503
HP15_3504: HP15_3504 - histone-like bacterial DNA-binding protein, at 3,688,507 to 3,688,779
_3504
HP15_3505: HP15_3505 - RND type efflux pump involved in aminoglycoside resistance (AdeT), at 3,688,822 to 3,689,787
_3505
Position (kb)
3688
3689 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3687.108 kb on - strand at 3687.160 kb on + strand at 3687.165 kb on + strand at 3687.182 kb on + strand at 3687.383 kb on + strand, within HP15_3502 at 3687.391 kb on - strand, within HP15_3502 at 3687.396 kb on - strand, within HP15_3502 at 3687.398 kb on + strand, within HP15_3502 at 3687.445 kb on - strand, within HP15_3502 at 3687.485 kb on + strand, within HP15_3502 at 3687.491 kb on + strand, within HP15_3502 at 3687.579 kb on - strand, within HP15_3502 at 3687.580 kb on - strand, within HP15_3502 at 3687.628 kb on - strand, within HP15_3502 at 3687.731 kb on + strand, within HP15_3502 at 3687.744 kb on - strand, within HP15_3502 at 3687.771 kb on - strand, within HP15_3502 at 3687.871 kb on + strand, within HP15_3502 at 3688.011 kb on - strand at 3688.216 kb on + strand, within HP15_3503 at 3688.249 kb on + strand, within HP15_3503 at 3688.281 kb on - strand, within HP15_3503 at 3688.390 kb on - strand, within HP15_3503 at 3688.439 kb on + strand at 3688.460 kb on + strand at 3688.473 kb on - strand at 3688.516 kb on + strand at 3688.524 kb on - strand at 3688.535 kb on + strand, within HP15_3504 at 3688.636 kb on - strand, within HP15_3504 at 3688.667 kb on + strand, within HP15_3504 at 3688.720 kb on + strand, within HP15_3504 at 3688.757 kb on - strand at 3688.784 kb on + strand at 3688.792 kb on - strand at 3688.798 kb on - strand at 3688.816 kb on - strand at 3689.142 kb on + strand, within HP15_3505 at 3689.175 kb on - strand, within HP15_3505 at 3689.221 kb on + strand, within HP15_3505 at 3689.224 kb on - strand, within HP15_3505 at 3689.224 kb on - strand, within HP15_3505 at 3689.229 kb on - strand, within HP15_3505 at 3689.254 kb on + strand, within HP15_3505 at 3689.306 kb on - strand, within HP15_3505
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 3,687,108 - -1.0 3,687,160 + +0.6 3,687,165 + -0.6 3,687,182 + +0.6 3,687,383 + HP15_3502 0.25 +0.4 3,687,391 - HP15_3502 0.26 -0.6 3,687,396 - HP15_3502 0.26 +0.4 3,687,398 + HP15_3502 0.26 -1.3 3,687,445 - HP15_3502 0.31 +0.5 3,687,485 + HP15_3502 0.36 -0.6 3,687,491 + HP15_3502 0.36 -0.2 3,687,579 - HP15_3502 0.46 -0.5 3,687,580 - HP15_3502 0.46 -0.3 3,687,628 - HP15_3502 0.51 +0.3 3,687,731 + HP15_3502 0.62 -1.8 3,687,744 - HP15_3502 0.63 -1.7 3,687,771 - HP15_3502 0.66 -0.3 3,687,871 + HP15_3502 0.77 -0.2 3,688,011 - +0.2 3,688,216 + HP15_3503 0.33 -0.8 3,688,249 + HP15_3503 0.42 +0.1 3,688,281 - HP15_3503 0.51 -0.6 3,688,390 - HP15_3503 0.82 +0.2 3,688,439 + +0.2 3,688,460 + -1.8 3,688,473 - -2.0 3,688,516 + +0.8 3,688,524 - +0.9 3,688,535 + HP15_3504 0.10 -0.9 3,688,636 - HP15_3504 0.47 +0.1 3,688,667 + HP15_3504 0.59 -0.4 3,688,720 + HP15_3504 0.78 +0.8 3,688,757 - +2.1 3,688,784 + -0.5 3,688,792 - -2.1 3,688,798 - -0.1 3,688,816 - +0.8 3,689,142 + HP15_3505 0.33 +0.1 3,689,175 - HP15_3505 0.37 -0.2 3,689,221 + HP15_3505 0.41 +0.5 3,689,224 - HP15_3505 0.42 -1.2 3,689,224 - HP15_3505 0.42 -1.3 3,689,229 - HP15_3505 0.42 -0.3 3,689,254 + HP15_3505 0.45 +1.7 3,689,306 - HP15_3505 0.50 +0.9
Or see this region's nucleotide sequence