Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3414 and HP15_3415 are separated by 160 nucleotides HP15_3415 and HP15_3416 are separated by 512 nucleotides
HP15_3414: HP15_3414 - UvrD/REP helicase, at 3,586,824 to 3,589,145
_3414
HP15_3415: HP15_3415 - OmpA/MotB domain protein, at 3,589,306 to 3,590,514
_3415
HP15_3416: HP15_3416 - conserved hypothetical protein, at 3,591,027 to 3,592,301
_3416
Position (kb)
3589
3590
3591 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3588.330 kb on + strand, within HP15_3414 at 3588.351 kb on + strand, within HP15_3414 at 3588.368 kb on + strand, within HP15_3414 at 3588.371 kb on - strand, within HP15_3414 at 3588.376 kb on - strand, within HP15_3414 at 3588.376 kb on - strand, within HP15_3414 at 3588.387 kb on - strand, within HP15_3414 at 3588.394 kb on + strand, within HP15_3414 at 3588.597 kb on + strand, within HP15_3414 at 3588.638 kb on - strand, within HP15_3414 at 3588.718 kb on - strand, within HP15_3414 at 3588.738 kb on - strand, within HP15_3414 at 3588.826 kb on - strand, within HP15_3414 at 3588.861 kb on - strand, within HP15_3414 at 3588.893 kb on + strand, within HP15_3414 at 3588.957 kb on - strand at 3588.959 kb on - strand at 3589.151 kb on + strand at 3589.269 kb on + strand at 3589.395 kb on - strand at 3589.438 kb on - strand, within HP15_3415 at 3589.493 kb on + strand, within HP15_3415 at 3589.506 kb on - strand, within HP15_3415 at 3589.582 kb on + strand, within HP15_3415 at 3589.590 kb on - strand, within HP15_3415 at 3589.703 kb on + strand, within HP15_3415 at 3589.756 kb on - strand, within HP15_3415 at 3589.797 kb on - strand, within HP15_3415 at 3590.033 kb on + strand, within HP15_3415 at 3590.046 kb on - strand, within HP15_3415 at 3590.067 kb on - strand, within HP15_3415 at 3590.067 kb on - strand, within HP15_3415 at 3590.106 kb on - strand, within HP15_3415 at 3590.398 kb on - strand at 3590.448 kb on + strand at 3590.688 kb on + strand at 3590.698 kb on + strand at 3590.698 kb on + strand at 3590.706 kb on - strand at 3590.782 kb on - strand at 3590.792 kb on - strand at 3590.910 kb on + strand at 3590.914 kb on - strand at 3590.914 kb on - strand at 3590.956 kb on - strand at 3590.976 kb on - strand at 3591.056 kb on - strand at 3591.125 kb on + strand at 3591.223 kb on - strand, within HP15_3416 at 3591.223 kb on - strand, within HP15_3416 at 3591.505 kb on - strand, within HP15_3416
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 3,588,330 + HP15_3414 0.65 +0.9 3,588,351 + HP15_3414 0.66 +1.5 3,588,368 + HP15_3414 0.66 +0.7 3,588,371 - HP15_3414 0.67 +0.3 3,588,376 - HP15_3414 0.67 +0.7 3,588,376 - HP15_3414 0.67 +1.7 3,588,387 - HP15_3414 0.67 -0.9 3,588,394 + HP15_3414 0.68 +0.9 3,588,597 + HP15_3414 0.76 -0.5 3,588,638 - HP15_3414 0.78 +0.5 3,588,718 - HP15_3414 0.82 +1.1 3,588,738 - HP15_3414 0.82 -0.2 3,588,826 - HP15_3414 0.86 -2.3 3,588,861 - HP15_3414 0.88 -0.7 3,588,893 + HP15_3414 0.89 +0.2 3,588,957 - +1.1 3,588,959 - -0.4 3,589,151 + -1.1 3,589,269 + +0.4 3,589,395 - +1.1 3,589,438 - HP15_3415 0.11 +0.9 3,589,493 + HP15_3415 0.15 -0.7 3,589,506 - HP15_3415 0.17 +0.4 3,589,582 + HP15_3415 0.23 -0.3 3,589,590 - HP15_3415 0.23 -1.5 3,589,703 + HP15_3415 0.33 -0.5 3,589,756 - HP15_3415 0.37 +1.9 3,589,797 - HP15_3415 0.41 +1.5 3,590,033 + HP15_3415 0.60 +0.0 3,590,046 - HP15_3415 0.61 -1.4 3,590,067 - HP15_3415 0.63 +0.5 3,590,067 - HP15_3415 0.63 +1.1 3,590,106 - HP15_3415 0.66 +0.4 3,590,398 - +0.1 3,590,448 + +0.1 3,590,688 + +1.0 3,590,698 + -0.2 3,590,698 + +1.1 3,590,706 - -0.1 3,590,782 - +0.0 3,590,792 - -1.3 3,590,910 + +0.2 3,590,914 - +1.7 3,590,914 - -0.4 3,590,956 - -0.0 3,590,976 - -1.0 3,591,056 - +0.4 3,591,125 + +0.1 3,591,223 - HP15_3416 0.15 +0.3 3,591,223 - HP15_3416 0.15 -1.6 3,591,505 - HP15_3416 0.37 -0.7
Or see this region's nucleotide sequence