Strain Fitness in Marinobacter adhaerens HP15 around HP15_3016

Experiment: m.b. Paraquat dichloride 0.0075 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3015 and HP15_3016 are separated by 75 nucleotidesHP15_3016 and HP15_tRNA48 are separated by 121 nucleotides HP15_3015: HP15_3015 - A/G-specific adenine glycosylase-like protein, at 3,160,078 to 3,161,145 _3015 HP15_3016: HP15_3016 - Ion traffic superfamily protein, at 3,161,221 to 3,161,493 _3016 HP15_tRNA48: HP15_tRNA48 - tRNA-Phe, at 3,161,615 to 3,161,690 _tRNA48 Position (kb) 3161 3162Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3160.259 kb on + strand, within HP15_3015at 3160.312 kb on - strand, within HP15_3015at 3160.431 kb on + strand, within HP15_3015at 3160.460 kb on - strand, within HP15_3015at 3160.494 kb on + strand, within HP15_3015at 3160.597 kb on - strand, within HP15_3015at 3160.610 kb on + strand, within HP15_3015at 3160.618 kb on - strand, within HP15_3015at 3160.711 kb on - strand, within HP15_3015at 3160.728 kb on - strand, within HP15_3015at 3160.730 kb on + strand, within HP15_3015at 3160.883 kb on + strand, within HP15_3015at 3160.997 kb on - strand, within HP15_3015at 3160.997 kb on - strand, within HP15_3015at 3161.142 kb on - strandat 3161.266 kb on + strand, within HP15_3016at 3161.274 kb on - strand, within HP15_3016at 3161.281 kb on + strand, within HP15_3016at 3161.299 kb on + strand, within HP15_3016at 3161.398 kb on - strand, within HP15_3016at 3161.460 kb on - strand, within HP15_3016at 3161.511 kb on - strandat 3161.753 kb on - strandat 3161.797 kb on - strandat 3161.899 kb on + strandat 3161.982 kb on + strandat 3162.086 kb on - strandat 3162.236 kb on - strandat 3162.236 kb on - strandat 3162.247 kb on + strandat 3162.416 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml
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3,160,259 + HP15_3015 0.17 -0.7
3,160,312 - HP15_3015 0.22 -0.8
3,160,431 + HP15_3015 0.33 +0.9
3,160,460 - HP15_3015 0.36 -1.1
3,160,494 + HP15_3015 0.39 -0.7
3,160,597 - HP15_3015 0.49 +0.0
3,160,610 + HP15_3015 0.50 +1.2
3,160,618 - HP15_3015 0.51 -0.3
3,160,711 - HP15_3015 0.59 +1.3
3,160,728 - HP15_3015 0.61 -1.4
3,160,730 + HP15_3015 0.61 +0.3
3,160,883 + HP15_3015 0.75 -1.5
3,160,997 - HP15_3015 0.86 +3.5
3,160,997 - HP15_3015 0.86 -0.1
3,161,142 - -0.9
3,161,266 + HP15_3016 0.16 +2.6
3,161,274 - HP15_3016 0.19 +1.0
3,161,281 + HP15_3016 0.22 +1.9
3,161,299 + HP15_3016 0.29 +0.3
3,161,398 - HP15_3016 0.65 +4.5
3,161,460 - HP15_3016 0.88 +0.9
3,161,511 - +2.5
3,161,753 - -2.2
3,161,797 - +1.2
3,161,899 + -0.0
3,161,982 + -0.3
3,162,086 - -0.0
3,162,236 - +0.1
3,162,236 - -1.9
3,162,247 + +3.5
3,162,416 - +1.7

Or see this region's nucleotide sequence