Strain Fitness in Marinobacter adhaerens HP15 around HP15_2997

Experiment: m.b. Paraquat dichloride 0.0075 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2996 and HP15_2997 are separated by 427 nucleotidesHP15_2997 and HP15_2998 overlap by 1 nucleotides HP15_2996: HP15_2996 - acetyl-CoA acetyltransferase, at 3,139,357 to 3,140,553 _2996 HP15_2997: HP15_2997 - hemin ABC transporter, ATP-binding protein HutD, at 3,140,981 to 3,141,802 _2997 HP15_2998: HP15_2998 - hemin ABC transporter, permease protein, at 3,141,802 to 3,142,839 _2998 Position (kb) 3140 3141 3142Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3139.992 kb on + strand, within HP15_2996at 3139.992 kb on + strand, within HP15_2996at 3140.050 kb on + strand, within HP15_2996at 3140.058 kb on - strand, within HP15_2996at 3140.156 kb on - strand, within HP15_2996at 3140.273 kb on + strand, within HP15_2996at 3140.338 kb on + strand, within HP15_2996at 3140.384 kb on + strand, within HP15_2996at 3140.494 kb on + strandat 3140.574 kb on - strandat 3140.666 kb on - strandat 3140.713 kb on - strandat 3140.735 kb on - strandat 3140.947 kb on + strandat 3141.024 kb on + strandat 3141.042 kb on - strandat 3141.054 kb on + strandat 3141.055 kb on + strandat 3141.099 kb on - strand, within HP15_2997at 3141.116 kb on - strand, within HP15_2997at 3141.116 kb on - strand, within HP15_2997at 3141.126 kb on - strand, within HP15_2997at 3141.208 kb on + strand, within HP15_2997at 3141.208 kb on + strand, within HP15_2997at 3141.340 kb on + strand, within HP15_2997at 3141.348 kb on - strand, within HP15_2997at 3141.348 kb on - strand, within HP15_2997at 3141.348 kb on - strand, within HP15_2997at 3141.399 kb on + strand, within HP15_2997at 3141.399 kb on + strand, within HP15_2997at 3141.407 kb on - strand, within HP15_2997at 3141.483 kb on - strand, within HP15_2997at 3141.495 kb on + strand, within HP15_2997at 3141.568 kb on - strand, within HP15_2997at 3141.663 kb on + strand, within HP15_2997at 3141.690 kb on + strand, within HP15_2997at 3141.736 kb on + strandat 3141.756 kb on - strandat 3141.853 kb on - strandat 3141.924 kb on + strand, within HP15_2998at 3142.025 kb on - strand, within HP15_2998at 3142.218 kb on + strand, within HP15_2998at 3142.278 kb on - strand, within HP15_2998at 3142.394 kb on + strand, within HP15_2998at 3142.449 kb on - strand, within HP15_2998at 3142.556 kb on - strand, within HP15_2998at 3142.559 kb on + strand, within HP15_2998at 3142.566 kb on - strand, within HP15_2998

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml
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3,139,992 + HP15_2996 0.53 +1.3
3,139,992 + HP15_2996 0.53 +0.9
3,140,050 + HP15_2996 0.58 +0.3
3,140,058 - HP15_2996 0.59 +3.4
3,140,156 - HP15_2996 0.67 +3.3
3,140,273 + HP15_2996 0.77 +2.2
3,140,338 + HP15_2996 0.82 +0.4
3,140,384 + HP15_2996 0.86 +2.8
3,140,494 + +0.4
3,140,574 - +1.8
3,140,666 - +3.7
3,140,713 - +2.0
3,140,735 - +0.1
3,140,947 + +2.7
3,141,024 + -0.0
3,141,042 - -1.9
3,141,054 + -0.6
3,141,055 + -0.1
3,141,099 - HP15_2997 0.14 +0.3
3,141,116 - HP15_2997 0.16 +2.6
3,141,116 - HP15_2997 0.16 +1.2
3,141,126 - HP15_2997 0.18 +1.9
3,141,208 + HP15_2997 0.28 +0.8
3,141,208 + HP15_2997 0.28 -2.8
3,141,340 + HP15_2997 0.44 +0.1
3,141,348 - HP15_2997 0.45 +0.6
3,141,348 - HP15_2997 0.45 +2.0
3,141,348 - HP15_2997 0.45 +1.1
3,141,399 + HP15_2997 0.51 +0.1
3,141,399 + HP15_2997 0.51 +0.6
3,141,407 - HP15_2997 0.52 +0.4
3,141,483 - HP15_2997 0.61 -0.5
3,141,495 + HP15_2997 0.63 +1.0
3,141,568 - HP15_2997 0.71 +0.3
3,141,663 + HP15_2997 0.83 -0.1
3,141,690 + HP15_2997 0.86 +0.4
3,141,736 + +0.6
3,141,756 - +0.4
3,141,853 - +0.2
3,141,924 + HP15_2998 0.12 +0.3
3,142,025 - HP15_2998 0.21 +0.9
3,142,218 + HP15_2998 0.40 +0.2
3,142,278 - HP15_2998 0.46 -0.4
3,142,394 + HP15_2998 0.57 +0.0
3,142,449 - HP15_2998 0.62 +1.6
3,142,556 - HP15_2998 0.73 -0.6
3,142,559 + HP15_2998 0.73 +1.7
3,142,566 - HP15_2998 0.74 -0.1

Or see this region's nucleotide sequence