Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2863 and HP15_2864 are separated by 179 nucleotides HP15_2864 and HP15_2865 are separated by 449 nucleotides HP15_2865 and HP15_2866 are separated by 229 nucleotides
HP15_2863: HP15_2863 - peptidase S15, at 3,001,261 to 3,002,151
_2863
HP15_2864: HP15_2864 - cis-3-chloroacrylic acid dehalogenase, at 3,002,331 to 3,002,762
_2864
HP15_2865: HP15_2865 - hypothetical protein, at 3,003,212 to 3,003,325
_2865
HP15_2866: HP15_2866 - hypothetical protein, at 3,003,555 to 3,004,622
_2866
Position (kb)
3002
3003 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3001.357 kb on - strand, within HP15_2863 at 3001.370 kb on - strand, within HP15_2863 at 3001.415 kb on + strand, within HP15_2863 at 3001.435 kb on - strand, within HP15_2863 at 3001.440 kb on - strand, within HP15_2863 at 3001.440 kb on - strand, within HP15_2863 at 3001.441 kb on - strand, within HP15_2863 at 3001.451 kb on - strand, within HP15_2863 at 3001.557 kb on + strand, within HP15_2863 at 3001.574 kb on + strand, within HP15_2863 at 3001.635 kb on - strand, within HP15_2863 at 3001.672 kb on + strand, within HP15_2863 at 3001.772 kb on + strand, within HP15_2863 at 3001.853 kb on + strand, within HP15_2863 at 3001.853 kb on + strand, within HP15_2863 at 3001.853 kb on + strand, within HP15_2863 at 3001.903 kb on - strand, within HP15_2863 at 3002.034 kb on + strand, within HP15_2863 at 3002.070 kb on - strand at 3002.102 kb on + strand at 3002.110 kb on + strand at 3002.117 kb on - strand at 3002.181 kb on - strand at 3002.181 kb on - strand at 3002.190 kb on - strand at 3002.285 kb on - strand at 3002.311 kb on + strand at 3002.319 kb on - strand at 3002.336 kb on + strand at 3002.366 kb on - strand at 3002.399 kb on + strand, within HP15_2864 at 3002.421 kb on + strand, within HP15_2864 at 3002.501 kb on + strand, within HP15_2864 at 3002.554 kb on - strand, within HP15_2864 at 3002.554 kb on - strand, within HP15_2864 at 3002.589 kb on - strand, within HP15_2864 at 3002.615 kb on + strand, within HP15_2864 at 3002.849 kb on - strand at 3002.874 kb on + strand at 3002.922 kb on + strand at 3002.971 kb on + strand at 3002.979 kb on - strand at 3003.117 kb on + strand at 3003.125 kb on - strand at 3003.230 kb on - strand, within HP15_2865 at 3003.230 kb on - strand, within HP15_2865 at 3003.239 kb on - strand, within HP15_2865 at 3003.411 kb on + strand at 3003.458 kb on - strand at 3003.467 kb on - strand at 3003.470 kb on + strand at 3003.481 kb on + strand at 3003.482 kb on - strand at 3003.599 kb on + strand at 3003.666 kb on - strand, within HP15_2866 at 3003.736 kb on + strand, within HP15_2866 at 3003.746 kb on - strand, within HP15_2866 at 3003.748 kb on + strand, within HP15_2866 at 3003.748 kb on + strand, within HP15_2866
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 3,001,357 - HP15_2863 0.11 -0.7 3,001,370 - HP15_2863 0.12 -0.6 3,001,415 + HP15_2863 0.17 -0.2 3,001,435 - HP15_2863 0.20 +0.7 3,001,440 - HP15_2863 0.20 -1.2 3,001,440 - HP15_2863 0.20 -0.6 3,001,441 - HP15_2863 0.20 -1.1 3,001,451 - HP15_2863 0.21 -1.0 3,001,557 + HP15_2863 0.33 -0.8 3,001,574 + HP15_2863 0.35 -0.7 3,001,635 - HP15_2863 0.42 +1.1 3,001,672 + HP15_2863 0.46 -0.7 3,001,772 + HP15_2863 0.57 -2.8 3,001,853 + HP15_2863 0.66 -1.0 3,001,853 + HP15_2863 0.66 +0.2 3,001,853 + HP15_2863 0.66 -0.1 3,001,903 - HP15_2863 0.72 +2.1 3,002,034 + HP15_2863 0.87 +0.8 3,002,070 - -1.1 3,002,102 + -0.2 3,002,110 + -0.3 3,002,117 - -0.2 3,002,181 - +0.4 3,002,181 - +1.7 3,002,190 - -1.1 3,002,285 - -0.1 3,002,311 + -1.1 3,002,319 - -1.1 3,002,336 + -1.6 3,002,366 - +0.4 3,002,399 + HP15_2864 0.16 +1.8 3,002,421 + HP15_2864 0.21 +1.1 3,002,501 + HP15_2864 0.39 -0.2 3,002,554 - HP15_2864 0.52 +1.2 3,002,554 - HP15_2864 0.52 +0.8 3,002,589 - HP15_2864 0.60 +0.5 3,002,615 + HP15_2864 0.66 +2.0 3,002,849 - -0.4 3,002,874 + -1.8 3,002,922 + -1.1 3,002,971 + -0.9 3,002,979 - +0.4 3,003,117 + +2.4 3,003,125 - +0.8 3,003,230 - HP15_2865 0.16 +1.1 3,003,230 - HP15_2865 0.16 -1.5 3,003,239 - HP15_2865 0.24 +0.5 3,003,411 + -0.2 3,003,458 - -1.4 3,003,467 - +1.1 3,003,470 + -1.2 3,003,481 + +1.7 3,003,482 - +0.4 3,003,599 + -0.3 3,003,666 - HP15_2866 0.10 +0.8 3,003,736 + HP15_2866 0.17 +0.2 3,003,746 - HP15_2866 0.18 -0.7 3,003,748 + HP15_2866 0.18 +0.7 3,003,748 + HP15_2866 0.18 -1.8
Or see this region's nucleotide sequence