Strain Fitness in Marinobacter adhaerens HP15 around HP15_2577

Experiment: m.b. Paraquat dichloride 0.0075 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2576 and HP15_2577 are separated by 114 nucleotidesHP15_2577 and HP15_2578 are separated by 110 nucleotidesHP15_2578 and HP15_2579 are separated by 15 nucleotides HP15_2576: HP15_2576 - acyl-CoA dehydrogenase domain protein, at 2,724,069 to 2,725,871 _2576 HP15_2577: HP15_2577 - protein containing helix-turn-helix, AraC domain, at 2,725,986 to 2,726,981 _2577 HP15_2578: HP15_2578 - conserved hypothetical protein, at 2,727,092 to 2,727,256 _2578 HP15_2579: HP15_2579 - hemolysin, at 2,727,272 to 2,728,294 _2579 Position (kb) 2725 2726 2727Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2725.060 kb on - strand, within HP15_2576at 2725.078 kb on + strand, within HP15_2576at 2725.142 kb on - strand, within HP15_2576at 2725.238 kb on - strand, within HP15_2576at 2725.297 kb on + strand, within HP15_2576at 2725.305 kb on - strand, within HP15_2576at 2725.305 kb on - strand, within HP15_2576at 2725.366 kb on + strand, within HP15_2576at 2725.382 kb on + strand, within HP15_2576at 2725.418 kb on - strand, within HP15_2576at 2725.512 kb on - strand, within HP15_2576at 2725.520 kb on - strand, within HP15_2576at 2725.577 kb on + strand, within HP15_2576at 2725.633 kb on + strand, within HP15_2576at 2725.708 kb on - strandat 2725.709 kb on - strandat 2725.874 kb on - strandat 2726.027 kb on - strandat 2726.032 kb on - strandat 2726.419 kb on + strand, within HP15_2577at 2726.512 kb on + strand, within HP15_2577at 2726.529 kb on - strand, within HP15_2577at 2726.534 kb on - strand, within HP15_2577at 2726.679 kb on + strand, within HP15_2577at 2726.738 kb on + strand, within HP15_2577at 2726.799 kb on + strand, within HP15_2577at 2726.942 kb on + strandat 2726.982 kb on + strandat 2726.992 kb on + strandat 2727.079 kb on + strandat 2727.108 kb on + strandat 2727.179 kb on - strand, within HP15_2578at 2727.258 kb on - strandat 2727.261 kb on + strandat 2727.269 kb on + strandat 2727.308 kb on + strandat 2727.538 kb on - strand, within HP15_2579at 2727.565 kb on - strand, within HP15_2579at 2727.570 kb on - strand, within HP15_2579at 2727.613 kb on + strand, within HP15_2579at 2727.658 kb on - strand, within HP15_2579at 2727.663 kb on - strand, within HP15_2579at 2727.815 kb on - strand, within HP15_2579at 2727.934 kb on + strand, within HP15_2579

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml
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2,725,060 - HP15_2576 0.55 -1.3
2,725,078 + HP15_2576 0.56 +0.0
2,725,142 - HP15_2576 0.60 +1.8
2,725,238 - HP15_2576 0.65 +0.4
2,725,297 + HP15_2576 0.68 +2.7
2,725,305 - HP15_2576 0.69 -0.4
2,725,305 - HP15_2576 0.69 -0.8
2,725,366 + HP15_2576 0.72 -1.4
2,725,382 + HP15_2576 0.73 +0.1
2,725,418 - HP15_2576 0.75 +1.1
2,725,512 - HP15_2576 0.80 -0.3
2,725,520 - HP15_2576 0.80 +0.3
2,725,577 + HP15_2576 0.84 +2.7
2,725,633 + HP15_2576 0.87 +0.2
2,725,708 - +0.3
2,725,709 - -1.8
2,725,874 - +0.6
2,726,027 - +0.1
2,726,032 - -0.8
2,726,419 + HP15_2577 0.43 +0.9
2,726,512 + HP15_2577 0.53 -0.6
2,726,529 - HP15_2577 0.55 +0.1
2,726,534 - HP15_2577 0.55 -0.3
2,726,679 + HP15_2577 0.70 +3.2
2,726,738 + HP15_2577 0.76 +2.3
2,726,799 + HP15_2577 0.82 -1.1
2,726,942 + -1.1
2,726,982 + +0.6
2,726,992 + -2.5
2,727,079 + +0.6
2,727,108 + -1.6
2,727,179 - HP15_2578 0.53 -0.8
2,727,258 - -0.5
2,727,261 + +0.1
2,727,269 + +0.5
2,727,308 + -1.2
2,727,538 - HP15_2579 0.26 +0.0
2,727,565 - HP15_2579 0.29 -0.5
2,727,570 - HP15_2579 0.29 +0.7
2,727,613 + HP15_2579 0.33 -0.0
2,727,658 - HP15_2579 0.38 +0.2
2,727,663 - HP15_2579 0.38 +0.5
2,727,815 - HP15_2579 0.53 -1.7
2,727,934 + HP15_2579 0.65 +1.1

Or see this region's nucleotide sequence