Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2073

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2071 and Psest_2072 are separated by 111 nucleotidesPsest_2072 and Psest_2073 are separated by 37 nucleotidesPsest_2073 and Psest_2074 are separated by 14 nucleotidesPsest_2074 and Psest_2075 are separated by 83 nucleotides Psest_2071: Psest_2071 - hydroxyacylglutathione hydrolase, at 2,200,316 to 2,201,095 _2071 Psest_2072: Psest_2072 - Methyltransferase domain., at 2,201,207 to 2,201,977 _2072 Psest_2073: Psest_2073 - Ribonuclease HI, at 2,202,015 to 2,202,470 _2073 Psest_2074: Psest_2074 - DNA polymerase III, epsilon subunit, Proteobacterial, at 2,202,485 to 2,203,210 _2074 Psest_2075: Psest_2075 - Arginine/lysine/ornithine decarboxylases, at 2,203,294 to 2,205,543 _2075 Position (kb) 2202 2203Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2201.055 kb on + strandat 2201.055 kb on + strandat 2201.055 kb on + strandat 2201.055 kb on + strandat 2201.055 kb on + strandat 2201.055 kb on + strandat 2201.055 kb on + strandat 2201.055 kb on + strandat 2201.055 kb on + strandat 2201.055 kb on + strandat 2201.055 kb on + strandat 2201.055 kb on + strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.056 kb on - strandat 2201.132 kb on + strandat 2201.132 kb on + strandat 2201.133 kb on - strandat 2201.133 kb on - strandat 2201.357 kb on + strand, within Psest_2072at 2201.357 kb on + strand, within Psest_2072at 2201.358 kb on - strand, within Psest_2072at 2201.358 kb on - strand, within Psest_2072at 2201.656 kb on - strand, within Psest_2072at 2201.675 kb on - strand, within Psest_2072at 2201.747 kb on + strand, within Psest_2072at 2201.747 kb on + strand, within Psest_2072at 2201.840 kb on + strand, within Psest_2072at 2201.840 kb on + strand, within Psest_2072at 2201.840 kb on + strand, within Psest_2072at 2201.840 kb on + strand, within Psest_2072at 2201.841 kb on - strand, within Psest_2072at 2201.841 kb on - strand, within Psest_2072at 2201.841 kb on - strand, within Psest_2072at 2201.841 kb on - strand, within Psest_2072at 2201.841 kb on - strand, within Psest_2072at 2201.841 kb on - strand, within Psest_2072at 2201.841 kb on - strand, within Psest_2072at 2201.841 kb on - strand, within Psest_2072at 2201.844 kb on + strand, within Psest_2072at 2201.844 kb on + strand, within Psest_2072at 2201.845 kb on - strand, within Psest_2072at 2202.439 kb on + strandat 2202.448 kb on + strandat 2202.448 kb on + strandat 2202.468 kb on + strandat 2202.468 kb on + strandat 2203.261 kb on - strandat 2203.267 kb on + strandat 2203.268 kb on - strandat 2203.297 kb on + strandat 2203.298 kb on - strandat 2203.298 kb on - strandat 2203.298 kb on - strandat 2203.340 kb on + strandat 2203.340 kb on + strandat 2203.340 kb on + strandat 2203.340 kb on + strandat 2203.341 kb on - strandat 2203.341 kb on - strandat 2203.341 kb on - strandat 2203.370 kb on + strandat 2203.370 kb on + strandat 2203.371 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,201,055 + +0.5
2,201,055 + -1.4
2,201,055 + -1.2
2,201,055 + +0.6
2,201,055 + -0.9
2,201,055 + -1.2
2,201,055 + -0.7
2,201,055 + -0.1
2,201,055 + -1.4
2,201,055 + +1.5
2,201,055 + +0.2
2,201,055 + -0.4
2,201,056 - -0.9
2,201,056 - +0.7
2,201,056 - +0.0
2,201,056 - -0.1
2,201,056 - -0.6
2,201,056 - -0.5
2,201,056 - +0.3
2,201,056 - -0.1
2,201,056 - +0.1
2,201,056 - +0.5
2,201,056 - -0.2
2,201,056 - -2.5
2,201,056 - +0.2
2,201,056 - -0.5
2,201,056 - +0.0
2,201,056 - -0.3
2,201,132 + +2.0
2,201,132 + -3.4
2,201,133 - -0.9
2,201,133 - +0.2
2,201,357 + Psest_2072 0.19 +1.1
2,201,357 + Psest_2072 0.19 +0.4
2,201,358 - Psest_2072 0.20 +0.4
2,201,358 - Psest_2072 0.20 +0.3
2,201,656 - Psest_2072 0.58 -1.8
2,201,675 - Psest_2072 0.61 +0.8
2,201,747 + Psest_2072 0.70 +0.6
2,201,747 + Psest_2072 0.70 -0.5
2,201,840 + Psest_2072 0.82 +0.7
2,201,840 + Psest_2072 0.82 +0.3
2,201,840 + Psest_2072 0.82 -0.5
2,201,840 + Psest_2072 0.82 +0.6
2,201,841 - Psest_2072 0.82 +0.9
2,201,841 - Psest_2072 0.82 +1.0
2,201,841 - Psest_2072 0.82 +0.8
2,201,841 - Psest_2072 0.82 +0.2
2,201,841 - Psest_2072 0.82 +1.2
2,201,841 - Psest_2072 0.82 +1.1
2,201,841 - Psest_2072 0.82 -0.1
2,201,841 - Psest_2072 0.82 +1.3
2,201,844 + Psest_2072 0.83 -3.4
2,201,844 + Psest_2072 0.83 +0.8
2,201,845 - Psest_2072 0.83 +0.0
2,202,439 + -0.0
2,202,448 + +0.6
2,202,448 + +0.7
2,202,468 + -0.4
2,202,468 + -0.5
2,203,261 - +0.1
2,203,267 + +0.8
2,203,268 - +0.3
2,203,297 + -0.1
2,203,298 - -0.5
2,203,298 - -0.2
2,203,298 - +1.0
2,203,340 + +0.9
2,203,340 + +0.5
2,203,340 + -0.3
2,203,340 + -0.2
2,203,341 - -0.8
2,203,341 - +1.3
2,203,341 - +0.3
2,203,370 + +0.1
2,203,370 + +0.8
2,203,371 - -0.8

Or see this region's nucleotide sequence