Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1946 and HP15_tRNA35 are separated by 55 nucleotides HP15_tRNA35 and HP15_1947 are separated by 182 nucleotides HP15_1947 and HP15_1948 are separated by 222 nucleotides
HP15_1946: HP15_1946 - membrane protein containing DUF6, transmembrane, at 2,065,503 to 2,066,453
_1946
HP15_tRNA35: HP15_tRNA35 - tRNA-Val, at 2,066,509 to 2,066,585
_tRNA35
HP15_1947: HP15_1947 - hypothetical protein, at 2,066,768 to 2,067,004
_1947
HP15_1948: HP15_1948 - hypothetical protein, at 2,067,227 to 2,067,409
_1948
Position (kb)
2066
2067
2068 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2065.778 kb on + strand, within HP15_1946 at 2065.791 kb on + strand, within HP15_1946 at 2065.992 kb on + strand, within HP15_1946 at 2066.062 kb on + strand, within HP15_1946 at 2066.080 kb on - strand, within HP15_1946 at 2066.101 kb on - strand, within HP15_1946 at 2066.108 kb on + strand, within HP15_1946 at 2066.151 kb on + strand, within HP15_1946 at 2066.159 kb on - strand, within HP15_1946 at 2066.177 kb on + strand, within HP15_1946 at 2066.185 kb on - strand, within HP15_1946 at 2066.185 kb on - strand, within HP15_1946 at 2066.248 kb on + strand, within HP15_1946 at 2066.250 kb on - strand, within HP15_1946 at 2066.269 kb on - strand, within HP15_1946 at 2066.302 kb on - strand, within HP15_1946 at 2066.304 kb on + strand, within HP15_1946 at 2066.307 kb on - strand, within HP15_1946 at 2066.309 kb on + strand, within HP15_1946 at 2066.317 kb on - strand, within HP15_1946 at 2066.359 kb on + strand at 2066.364 kb on + strand at 2066.393 kb on + strand at 2066.401 kb on - strand at 2066.505 kb on + strand at 2066.693 kb on + strand at 2066.725 kb on - strand at 2066.788 kb on + strand at 2066.945 kb on + strand, within HP15_1947 at 2066.949 kb on + strand, within HP15_1947 at 2067.110 kb on + strand at 2067.162 kb on - strand at 2067.162 kb on - strand at 2067.194 kb on + strand at 2067.222 kb on - strand at 2067.286 kb on - strand, within HP15_1948 at 2067.288 kb on + strand, within HP15_1948 at 2067.343 kb on + strand, within HP15_1948 at 2067.343 kb on + strand, within HP15_1948 at 2067.351 kb on - strand, within HP15_1948 at 2067.472 kb on - strand at 2067.762 kb on + strand at 2067.908 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 2,065,778 + HP15_1946 0.29 -0.8 2,065,791 + HP15_1946 0.30 +1.5 2,065,992 + HP15_1946 0.51 +1.2 2,066,062 + HP15_1946 0.59 -1.7 2,066,080 - HP15_1946 0.61 +0.1 2,066,101 - HP15_1946 0.63 -0.5 2,066,108 + HP15_1946 0.64 +0.5 2,066,151 + HP15_1946 0.68 -0.6 2,066,159 - HP15_1946 0.69 -1.3 2,066,177 + HP15_1946 0.71 -1.4 2,066,185 - HP15_1946 0.72 -0.5 2,066,185 - HP15_1946 0.72 +1.4 2,066,248 + HP15_1946 0.78 -3.1 2,066,250 - HP15_1946 0.79 -0.2 2,066,269 - HP15_1946 0.81 -0.4 2,066,302 - HP15_1946 0.84 -0.5 2,066,304 + HP15_1946 0.84 +1.4 2,066,307 - HP15_1946 0.85 +1.6 2,066,309 + HP15_1946 0.85 -0.7 2,066,317 - HP15_1946 0.86 +0.3 2,066,359 + -0.8 2,066,364 + +0.2 2,066,393 + +1.0 2,066,401 - +0.7 2,066,505 + -1.0 2,066,693 + +0.6 2,066,725 - +2.1 2,066,788 + +1.1 2,066,945 + HP15_1947 0.75 -1.3 2,066,949 + HP15_1947 0.76 -0.4 2,067,110 + -0.6 2,067,162 - -0.2 2,067,162 - -1.4 2,067,194 + +0.1 2,067,222 - +0.3 2,067,286 - HP15_1948 0.32 -1.1 2,067,288 + HP15_1948 0.33 +0.4 2,067,343 + HP15_1948 0.63 -0.0 2,067,343 + HP15_1948 0.63 +0.4 2,067,351 - HP15_1948 0.68 -1.2 2,067,472 - -1.5 2,067,762 + +0.8 2,067,908 + -1.0
Or see this region's nucleotide sequence