Strain Fitness in Marinobacter adhaerens HP15 around HP15_1824

Experiment: m.b. Paraquat dichloride 0.0075 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1822 and HP15_1823 are separated by 91 nucleotidesHP15_1823 and HP15_1824 are separated by 123 nucleotidesHP15_1824 and HP15_1825 overlap by 17 nucleotidesHP15_1825 and HP15_1826 are separated by 46 nucleotides HP15_1822: HP15_1822 - CvpA family protein, at 1,919,420 to 1,919,989 _1822 HP15_1823: HP15_1823 - sporulation domain protein, at 1,920,081 to 1,920,752 _1823 HP15_1824: HP15_1824 - bifunctional protein includes folylpolyglutamate synthase (FPGS) dihydrofolate synthase, at 1,920,876 to 1,922,198 _1824 HP15_1825: HP15_1825 - acetyl-CoA carboxylase, carboxyl transferase, beta subunit, at 1,922,182 to 1,923,108 _1825 HP15_1826: HP15_1826 - tryptophan synthase, alpha subunit, at 1,923,155 to 1,923,967 _1826 Position (kb) 1920 1921 1922 1923Strain fitness (log2 ratio) -1 0 1 2 3 4at 1920.134 kb on - strandat 1920.565 kb on - strand, within HP15_1823at 1920.805 kb on + strandat 1922.103 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml
remove
1,920,134 - +0.8
1,920,565 - HP15_1823 0.72 -1.4
1,920,805 + +4.6
1,922,103 - +0.8

Or see this region's nucleotide sequence