Strain Fitness in Marinobacter adhaerens HP15 around HP15_1823

Experiment: m.b. Paraquat dichloride 0.0075 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1821 and HP15_1822 are separated by 34 nucleotidesHP15_1822 and HP15_1823 are separated by 91 nucleotidesHP15_1823 and HP15_1824 are separated by 123 nucleotides HP15_1821: HP15_1821 - amidophosphoribosyltransferase, at 1,917,859 to 1,919,385 _1821 HP15_1822: HP15_1822 - CvpA family protein, at 1,919,420 to 1,919,989 _1822 HP15_1823: HP15_1823 - sporulation domain protein, at 1,920,081 to 1,920,752 _1823 HP15_1824: HP15_1824 - bifunctional protein includes folylpolyglutamate synthase (FPGS) dihydrofolate synthase, at 1,920,876 to 1,922,198 _1824 Position (kb) 1920 1921Strain fitness (log2 ratio) -1 0 1 2 3 4at 1919.439 kb on + strandat 1919.533 kb on + strand, within HP15_1822at 1919.551 kb on - strand, within HP15_1822at 1919.825 kb on - strand, within HP15_1822at 1919.863 kb on + strand, within HP15_1822at 1919.871 kb on - strand, within HP15_1822at 1920.134 kb on - strandat 1920.565 kb on - strand, within HP15_1823at 1920.805 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml
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1,919,439 + +4.6
1,919,533 + HP15_1822 0.20 +3.3
1,919,551 - HP15_1822 0.23 +1.4
1,919,825 - HP15_1822 0.71 -0.4
1,919,863 + HP15_1822 0.78 +2.3
1,919,871 - HP15_1822 0.79 +0.8
1,920,134 - +0.8
1,920,565 - HP15_1823 0.72 -1.4
1,920,805 + +4.6

Or see this region's nucleotide sequence