Strain Fitness in Marinobacter adhaerens HP15 around HP15_1821

Experiment: m.b. Paraquat dichloride 0.0075 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1820 and HP15_1821 are separated by 26 nucleotidesHP15_1821 and HP15_1822 are separated by 34 nucleotidesHP15_1822 and HP15_1823 are separated by 91 nucleotides HP15_1820: HP15_1820 - methionine gamma-lyase, at 1,916,591 to 1,917,832 _1820 HP15_1821: HP15_1821 - amidophosphoribosyltransferase, at 1,917,859 to 1,919,385 _1821 HP15_1822: HP15_1822 - CvpA family protein, at 1,919,420 to 1,919,989 _1822 HP15_1823: HP15_1823 - sporulation domain protein, at 1,920,081 to 1,920,752 _1823 Position (kb) 1917 1918 1919 1920Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1917.026 kb on + strand, within HP15_1820at 1917.027 kb on - strand, within HP15_1820at 1917.095 kb on + strand, within HP15_1820at 1917.147 kb on + strand, within HP15_1820at 1917.205 kb on + strand, within HP15_1820at 1917.213 kb on - strand, within HP15_1820at 1917.497 kb on + strand, within HP15_1820at 1917.604 kb on - strand, within HP15_1820at 1917.673 kb on - strand, within HP15_1820at 1917.680 kb on + strand, within HP15_1820at 1917.688 kb on - strand, within HP15_1820at 1917.735 kb on + strandat 1919.439 kb on + strandat 1919.533 kb on + strand, within HP15_1822at 1919.551 kb on - strand, within HP15_1822at 1919.825 kb on - strand, within HP15_1822at 1919.863 kb on + strand, within HP15_1822at 1919.871 kb on - strand, within HP15_1822at 1920.134 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml
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1,917,026 + HP15_1820 0.35 +1.4
1,917,027 - HP15_1820 0.35 -0.7
1,917,095 + HP15_1820 0.41 -1.7
1,917,147 + HP15_1820 0.45 +0.7
1,917,205 + HP15_1820 0.49 -0.3
1,917,213 - HP15_1820 0.50 -0.6
1,917,497 + HP15_1820 0.73 -1.8
1,917,604 - HP15_1820 0.82 -2.1
1,917,673 - HP15_1820 0.87 -2.4
1,917,680 + HP15_1820 0.88 +0.3
1,917,688 - HP15_1820 0.88 +1.0
1,917,735 + -1.1
1,919,439 + +4.6
1,919,533 + HP15_1822 0.20 +3.3
1,919,551 - HP15_1822 0.23 +1.4
1,919,825 - HP15_1822 0.71 -0.4
1,919,863 + HP15_1822 0.78 +2.3
1,919,871 - HP15_1822 0.79 +0.8
1,920,134 - +0.8

Or see this region's nucleotide sequence