Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1750 and HP15_1751 are separated by 57 nucleotides HP15_1751 and HP15_1752 are separated by 228 nucleotides HP15_1752 and HP15_1753 are separated by 28 nucleotides
HP15_1750: HP15_1750 - saccharopine dehydrogenase-like protein, at 1,850,088 to 1,851,329
_1750
HP15_1751: HP15_1751 - conserved hypothetical protein, membrane, at 1,851,387 to 1,851,803
_1751
HP15_1752: HP15_1752 - conserved hypothetical protein, at 1,852,032 to 1,852,340
_1752
HP15_1753: HP15_1753 - conserved hypothetical protein, secreted, at 1,852,369 to 1,852,842
_1753
Position (kb)
1851
1852 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1850.525 kb on - strand, within HP15_1750 at 1850.559 kb on - strand, within HP15_1750 at 1850.570 kb on + strand, within HP15_1750 at 1850.600 kb on - strand, within HP15_1750 at 1850.608 kb on - strand, within HP15_1750 at 1850.794 kb on + strand, within HP15_1750 at 1850.926 kb on - strand, within HP15_1750 at 1850.995 kb on - strand, within HP15_1750 at 1851.001 kb on + strand, within HP15_1750 at 1851.019 kb on - strand, within HP15_1750 at 1851.027 kb on - strand, within HP15_1750 at 1851.086 kb on - strand, within HP15_1750 at 1851.142 kb on + strand, within HP15_1750 at 1851.165 kb on + strand, within HP15_1750 at 1851.183 kb on - strand, within HP15_1750 at 1851.224 kb on + strand at 1851.232 kb on - strand at 1851.232 kb on - strand at 1851.483 kb on + strand, within HP15_1751 at 1851.640 kb on - strand, within HP15_1751 at 1851.658 kb on + strand, within HP15_1751 at 1851.658 kb on + strand, within HP15_1751 at 1851.713 kb on + strand, within HP15_1751 at 1851.764 kb on - strand at 1851.833 kb on + strand at 1851.960 kb on + strand at 1851.960 kb on + strand at 1851.968 kb on - strand at 1852.029 kb on + strand at 1852.029 kb on + strand at 1852.029 kb on + strand at 1852.029 kb on + strand at 1852.037 kb on - strand at 1852.037 kb on - strand at 1852.078 kb on + strand, within HP15_1752 at 1852.078 kb on + strand, within HP15_1752 at 1852.078 kb on + strand, within HP15_1752 at 1852.103 kb on - strand, within HP15_1752 at 1852.180 kb on + strand, within HP15_1752 at 1852.212 kb on + strand, within HP15_1752 at 1852.504 kb on - strand, within HP15_1753 at 1852.522 kb on - strand, within HP15_1753 at 1852.656 kb on - strand, within HP15_1753 at 1852.693 kb on + strand, within HP15_1753
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 1,850,525 - HP15_1750 0.35 -0.5 1,850,559 - HP15_1750 0.38 -0.3 1,850,570 + HP15_1750 0.39 +1.4 1,850,600 - HP15_1750 0.41 -0.1 1,850,608 - HP15_1750 0.42 -3.2 1,850,794 + HP15_1750 0.57 -1.0 1,850,926 - HP15_1750 0.67 -0.7 1,850,995 - HP15_1750 0.73 +0.5 1,851,001 + HP15_1750 0.74 +0.7 1,851,019 - HP15_1750 0.75 -0.6 1,851,027 - HP15_1750 0.76 -2.2 1,851,086 - HP15_1750 0.80 -0.3 1,851,142 + HP15_1750 0.85 -1.3 1,851,165 + HP15_1750 0.87 -1.9 1,851,183 - HP15_1750 0.88 +0.4 1,851,224 + +2.8 1,851,232 - +0.2 1,851,232 - +0.9 1,851,483 + HP15_1751 0.23 +0.0 1,851,640 - HP15_1751 0.61 +1.2 1,851,658 + HP15_1751 0.65 +1.5 1,851,658 + HP15_1751 0.65 +1.2 1,851,713 + HP15_1751 0.78 -1.6 1,851,764 - +3.1 1,851,833 + -0.4 1,851,960 + +0.1 1,851,960 + -1.6 1,851,968 - -0.2 1,852,029 + -1.3 1,852,029 + -0.9 1,852,029 + -0.3 1,852,029 + -0.7 1,852,037 - +1.5 1,852,037 - +0.5 1,852,078 + HP15_1752 0.15 +0.1 1,852,078 + HP15_1752 0.15 +0.9 1,852,078 + HP15_1752 0.15 +0.4 1,852,103 - HP15_1752 0.23 -0.2 1,852,180 + HP15_1752 0.48 -0.4 1,852,212 + HP15_1752 0.58 -2.0 1,852,504 - HP15_1753 0.28 -1.3 1,852,522 - HP15_1753 0.32 -0.4 1,852,656 - HP15_1753 0.61 +4.1 1,852,693 + HP15_1753 0.68 -0.9
Or see this region's nucleotide sequence