Strain Fitness in Marinobacter adhaerens HP15 around HP15_1751

Experiment: m.b. Paraquat dichloride 0.0075 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1750 and HP15_1751 are separated by 57 nucleotidesHP15_1751 and HP15_1752 are separated by 228 nucleotidesHP15_1752 and HP15_1753 are separated by 28 nucleotides HP15_1750: HP15_1750 - saccharopine dehydrogenase-like protein, at 1,850,088 to 1,851,329 _1750 HP15_1751: HP15_1751 - conserved hypothetical protein, membrane, at 1,851,387 to 1,851,803 _1751 HP15_1752: HP15_1752 - conserved hypothetical protein, at 1,852,032 to 1,852,340 _1752 HP15_1753: HP15_1753 - conserved hypothetical protein, secreted, at 1,852,369 to 1,852,842 _1753 Position (kb) 1851 1852Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1850.525 kb on - strand, within HP15_1750at 1850.559 kb on - strand, within HP15_1750at 1850.570 kb on + strand, within HP15_1750at 1850.600 kb on - strand, within HP15_1750at 1850.608 kb on - strand, within HP15_1750at 1850.794 kb on + strand, within HP15_1750at 1850.926 kb on - strand, within HP15_1750at 1850.995 kb on - strand, within HP15_1750at 1851.001 kb on + strand, within HP15_1750at 1851.019 kb on - strand, within HP15_1750at 1851.027 kb on - strand, within HP15_1750at 1851.086 kb on - strand, within HP15_1750at 1851.142 kb on + strand, within HP15_1750at 1851.165 kb on + strand, within HP15_1750at 1851.183 kb on - strand, within HP15_1750at 1851.224 kb on + strandat 1851.232 kb on - strandat 1851.232 kb on - strandat 1851.483 kb on + strand, within HP15_1751at 1851.640 kb on - strand, within HP15_1751at 1851.658 kb on + strand, within HP15_1751at 1851.658 kb on + strand, within HP15_1751at 1851.713 kb on + strand, within HP15_1751at 1851.764 kb on - strandat 1851.833 kb on + strandat 1851.960 kb on + strandat 1851.960 kb on + strandat 1851.968 kb on - strandat 1852.029 kb on + strandat 1852.029 kb on + strandat 1852.029 kb on + strandat 1852.029 kb on + strandat 1852.037 kb on - strandat 1852.037 kb on - strandat 1852.078 kb on + strand, within HP15_1752at 1852.078 kb on + strand, within HP15_1752at 1852.078 kb on + strand, within HP15_1752at 1852.103 kb on - strand, within HP15_1752at 1852.180 kb on + strand, within HP15_1752at 1852.212 kb on + strand, within HP15_1752at 1852.504 kb on - strand, within HP15_1753at 1852.522 kb on - strand, within HP15_1753at 1852.656 kb on - strand, within HP15_1753at 1852.693 kb on + strand, within HP15_1753

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml
remove
1,850,525 - HP15_1750 0.35 -0.5
1,850,559 - HP15_1750 0.38 -0.3
1,850,570 + HP15_1750 0.39 +1.4
1,850,600 - HP15_1750 0.41 -0.1
1,850,608 - HP15_1750 0.42 -3.2
1,850,794 + HP15_1750 0.57 -1.0
1,850,926 - HP15_1750 0.67 -0.7
1,850,995 - HP15_1750 0.73 +0.5
1,851,001 + HP15_1750 0.74 +0.7
1,851,019 - HP15_1750 0.75 -0.6
1,851,027 - HP15_1750 0.76 -2.2
1,851,086 - HP15_1750 0.80 -0.3
1,851,142 + HP15_1750 0.85 -1.3
1,851,165 + HP15_1750 0.87 -1.9
1,851,183 - HP15_1750 0.88 +0.4
1,851,224 + +2.8
1,851,232 - +0.2
1,851,232 - +0.9
1,851,483 + HP15_1751 0.23 +0.0
1,851,640 - HP15_1751 0.61 +1.2
1,851,658 + HP15_1751 0.65 +1.5
1,851,658 + HP15_1751 0.65 +1.2
1,851,713 + HP15_1751 0.78 -1.6
1,851,764 - +3.1
1,851,833 + -0.4
1,851,960 + +0.1
1,851,960 + -1.6
1,851,968 - -0.2
1,852,029 + -1.3
1,852,029 + -0.9
1,852,029 + -0.3
1,852,029 + -0.7
1,852,037 - +1.5
1,852,037 - +0.5
1,852,078 + HP15_1752 0.15 +0.1
1,852,078 + HP15_1752 0.15 +0.9
1,852,078 + HP15_1752 0.15 +0.4
1,852,103 - HP15_1752 0.23 -0.2
1,852,180 + HP15_1752 0.48 -0.4
1,852,212 + HP15_1752 0.58 -2.0
1,852,504 - HP15_1753 0.28 -1.3
1,852,522 - HP15_1753 0.32 -0.4
1,852,656 - HP15_1753 0.61 +4.1
1,852,693 + HP15_1753 0.68 -0.9

Or see this region's nucleotide sequence