Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1749 and HP15_1750 overlap by 4 nucleotides HP15_1750 and HP15_1751 are separated by 57 nucleotides HP15_1751 and HP15_1752 are separated by 228 nucleotides
HP15_1749: HP15_1749 - transport ATP-binding protein CydC, at 1,848,475 to 1,850,091
_1749
HP15_1750: HP15_1750 - saccharopine dehydrogenase-like protein, at 1,850,088 to 1,851,329
_1750
HP15_1751: HP15_1751 - conserved hypothetical protein, membrane, at 1,851,387 to 1,851,803
_1751
HP15_1752: HP15_1752 - conserved hypothetical protein, at 1,852,032 to 1,852,340
_1752
Position (kb)
1850
1851
1852 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1849.123 kb on + strand, within HP15_1749 at 1849.185 kb on + strand, within HP15_1749 at 1849.193 kb on - strand, within HP15_1749 at 1849.233 kb on + strand, within HP15_1749 at 1849.234 kb on + strand, within HP15_1749 at 1849.294 kb on - strand, within HP15_1749 at 1849.304 kb on - strand, within HP15_1749 at 1849.365 kb on + strand, within HP15_1749 at 1849.365 kb on + strand, within HP15_1749 at 1849.365 kb on + strand, within HP15_1749 at 1849.373 kb on - strand, within HP15_1749 at 1849.565 kb on - strand, within HP15_1749 at 1849.565 kb on - strand, within HP15_1749 at 1849.688 kb on + strand, within HP15_1749 at 1849.696 kb on - strand, within HP15_1749 at 1849.826 kb on + strand, within HP15_1749 at 1849.830 kb on - strand, within HP15_1749 at 1849.935 kb on - strand at 1849.947 kb on + strand at 1850.173 kb on + strand at 1850.181 kb on - strand at 1850.181 kb on - strand at 1850.181 kb on - strand at 1850.187 kb on + strand at 1850.190 kb on - strand at 1850.525 kb on - strand, within HP15_1750 at 1850.559 kb on - strand, within HP15_1750 at 1850.570 kb on + strand, within HP15_1750 at 1850.600 kb on - strand, within HP15_1750 at 1850.608 kb on - strand, within HP15_1750 at 1850.794 kb on + strand, within HP15_1750 at 1850.926 kb on - strand, within HP15_1750 at 1850.995 kb on - strand, within HP15_1750 at 1851.001 kb on + strand, within HP15_1750 at 1851.019 kb on - strand, within HP15_1750 at 1851.027 kb on - strand, within HP15_1750 at 1851.086 kb on - strand, within HP15_1750 at 1851.142 kb on + strand, within HP15_1750 at 1851.165 kb on + strand, within HP15_1750 at 1851.183 kb on - strand, within HP15_1750 at 1851.224 kb on + strand at 1851.232 kb on - strand at 1851.232 kb on - strand at 1851.483 kb on + strand, within HP15_1751 at 1851.640 kb on - strand, within HP15_1751 at 1851.658 kb on + strand, within HP15_1751 at 1851.658 kb on + strand, within HP15_1751 at 1851.713 kb on + strand, within HP15_1751 at 1851.764 kb on - strand at 1851.833 kb on + strand at 1851.960 kb on + strand at 1851.960 kb on + strand at 1851.968 kb on - strand at 1852.029 kb on + strand at 1852.029 kb on + strand at 1852.029 kb on + strand at 1852.029 kb on + strand at 1852.037 kb on - strand at 1852.037 kb on - strand at 1852.078 kb on + strand, within HP15_1752 at 1852.078 kb on + strand, within HP15_1752 at 1852.078 kb on + strand, within HP15_1752 at 1852.103 kb on - strand, within HP15_1752 at 1852.180 kb on + strand, within HP15_1752 at 1852.212 kb on + strand, within HP15_1752
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 1,849,123 + HP15_1749 0.40 -0.2 1,849,185 + HP15_1749 0.44 +0.0 1,849,193 - HP15_1749 0.44 +0.7 1,849,233 + HP15_1749 0.47 +0.8 1,849,234 + HP15_1749 0.47 +3.1 1,849,294 - HP15_1749 0.51 -0.1 1,849,304 - HP15_1749 0.51 +0.1 1,849,365 + HP15_1749 0.55 +0.3 1,849,365 + HP15_1749 0.55 +2.1 1,849,365 + HP15_1749 0.55 -2.7 1,849,373 - HP15_1749 0.56 +0.8 1,849,565 - HP15_1749 0.67 +0.7 1,849,565 - HP15_1749 0.67 -0.8 1,849,688 + HP15_1749 0.75 -0.7 1,849,696 - HP15_1749 0.76 +1.2 1,849,826 + HP15_1749 0.84 +0.0 1,849,830 - HP15_1749 0.84 +0.3 1,849,935 - -2.1 1,849,947 + -1.5 1,850,173 + +2.9 1,850,181 - -1.4 1,850,181 - -0.3 1,850,181 - -0.1 1,850,187 + -2.6 1,850,190 - +0.5 1,850,525 - HP15_1750 0.35 -0.5 1,850,559 - HP15_1750 0.38 -0.3 1,850,570 + HP15_1750 0.39 +1.4 1,850,600 - HP15_1750 0.41 -0.1 1,850,608 - HP15_1750 0.42 -3.2 1,850,794 + HP15_1750 0.57 -1.0 1,850,926 - HP15_1750 0.67 -0.7 1,850,995 - HP15_1750 0.73 +0.5 1,851,001 + HP15_1750 0.74 +0.7 1,851,019 - HP15_1750 0.75 -0.6 1,851,027 - HP15_1750 0.76 -2.2 1,851,086 - HP15_1750 0.80 -0.3 1,851,142 + HP15_1750 0.85 -1.3 1,851,165 + HP15_1750 0.87 -1.9 1,851,183 - HP15_1750 0.88 +0.4 1,851,224 + +2.8 1,851,232 - +0.2 1,851,232 - +0.9 1,851,483 + HP15_1751 0.23 +0.0 1,851,640 - HP15_1751 0.61 +1.2 1,851,658 + HP15_1751 0.65 +1.5 1,851,658 + HP15_1751 0.65 +1.2 1,851,713 + HP15_1751 0.78 -1.6 1,851,764 - +3.1 1,851,833 + -0.4 1,851,960 + +0.1 1,851,960 + -1.6 1,851,968 - -0.2 1,852,029 + -1.3 1,852,029 + -0.9 1,852,029 + -0.3 1,852,029 + -0.7 1,852,037 - +1.5 1,852,037 - +0.5 1,852,078 + HP15_1752 0.15 +0.1 1,852,078 + HP15_1752 0.15 +0.9 1,852,078 + HP15_1752 0.15 +0.4 1,852,103 - HP15_1752 0.23 -0.2 1,852,180 + HP15_1752 0.48 -0.4 1,852,212 + HP15_1752 0.58 -2.0
Or see this region's nucleotide sequence