Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1728 and HP15_1729 overlap by 1 nucleotides HP15_1729 and HP15_1730 are separated by 16 nucleotides
HP15_1728: HP15_1728 - phosphonate ABC transporter, periplasmic phosphonate-binding protein, at 1,828,327 to 1,829,175
_1728
HP15_1729: HP15_1729 - phosphonate ABC transporter, ATPase subunit, at 1,829,175 to 1,829,825
_1729
HP15_1730: HP15_1730 - binding-protein-dependent transport systems inner membrane component, at 1,829,842 to 1,831,308
_1730
Position (kb)
1829
1830 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1828.190 kb on + strand at 1828.198 kb on - strand at 1828.243 kb on - strand at 1828.305 kb on + strand at 1828.369 kb on + strand at 1828.369 kb on + strand at 1828.428 kb on + strand, within HP15_1728 at 1828.428 kb on + strand, within HP15_1728 at 1828.487 kb on - strand, within HP15_1728 at 1828.653 kb on + strand, within HP15_1728 at 1828.725 kb on - strand, within HP15_1728 at 1828.873 kb on + strand, within HP15_1728 at 1829.027 kb on + strand, within HP15_1728 at 1829.027 kb on + strand, within HP15_1728 at 1829.079 kb on + strand, within HP15_1728 at 1829.087 kb on - strand, within HP15_1728 at 1829.097 kb on + strand at 1829.206 kb on - strand at 1829.248 kb on + strand, within HP15_1729 at 1829.368 kb on - strand, within HP15_1729 at 1829.396 kb on - strand, within HP15_1729 at 1829.431 kb on + strand, within HP15_1729 at 1829.451 kb on - strand, within HP15_1729 at 1829.451 kb on - strand, within HP15_1729 at 1829.451 kb on - strand, within HP15_1729 at 1829.451 kb on - strand, within HP15_1729 at 1829.515 kb on - strand, within HP15_1729 at 1829.598 kb on - strand, within HP15_1729 at 1829.617 kb on - strand, within HP15_1729 at 1829.713 kb on - strand, within HP15_1729 at 1829.827 kb on - strand at 1829.841 kb on + strand at 1829.931 kb on + strand at 1830.018 kb on + strand, within HP15_1730 at 1830.052 kb on + strand, within HP15_1730 at 1830.052 kb on + strand, within HP15_1730 at 1830.052 kb on + strand, within HP15_1730 at 1830.055 kb on - strand, within HP15_1730 at 1830.060 kb on - strand, within HP15_1730 at 1830.060 kb on - strand, within HP15_1730 at 1830.378 kb on - strand, within HP15_1730 at 1830.468 kb on + strand, within HP15_1730 at 1830.539 kb on + strand, within HP15_1730 at 1830.612 kb on - strand, within HP15_1730 at 1830.807 kb on - strand, within HP15_1730
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 1,828,190 + -0.2 1,828,198 - -1.3 1,828,243 - +2.5 1,828,305 + -1.2 1,828,369 + -1.9 1,828,369 + -0.1 1,828,428 + HP15_1728 0.12 +1.8 1,828,428 + HP15_1728 0.12 -1.8 1,828,487 - HP15_1728 0.19 +1.1 1,828,653 + HP15_1728 0.38 +0.6 1,828,725 - HP15_1728 0.47 +1.1 1,828,873 + HP15_1728 0.64 -1.7 1,829,027 + HP15_1728 0.82 +0.7 1,829,027 + HP15_1728 0.82 -1.5 1,829,079 + HP15_1728 0.89 +0.9 1,829,087 - HP15_1728 0.90 +0.1 1,829,097 + +0.7 1,829,206 - -0.6 1,829,248 + HP15_1729 0.11 -1.5 1,829,368 - HP15_1729 0.30 -1.0 1,829,396 - HP15_1729 0.34 -2.1 1,829,431 + HP15_1729 0.39 -0.1 1,829,451 - HP15_1729 0.42 +1.5 1,829,451 - HP15_1729 0.42 +0.4 1,829,451 - HP15_1729 0.42 +1.3 1,829,451 - HP15_1729 0.42 +0.1 1,829,515 - HP15_1729 0.52 -0.3 1,829,598 - HP15_1729 0.65 -1.0 1,829,617 - HP15_1729 0.68 -1.7 1,829,713 - HP15_1729 0.83 -1.7 1,829,827 - +0.1 1,829,841 + -1.3 1,829,931 + +1.8 1,830,018 + HP15_1730 0.12 +3.1 1,830,052 + HP15_1730 0.14 +0.9 1,830,052 + HP15_1730 0.14 +0.4 1,830,052 + HP15_1730 0.14 -1.9 1,830,055 - HP15_1730 0.15 +0.4 1,830,060 - HP15_1730 0.15 -1.9 1,830,060 - HP15_1730 0.15 +0.0 1,830,378 - HP15_1730 0.37 -0.4 1,830,468 + HP15_1730 0.43 +0.1 1,830,539 + HP15_1730 0.48 +0.7 1,830,612 - HP15_1730 0.52 -0.1 1,830,807 - HP15_1730 0.66 +0.7
Or see this region's nucleotide sequence