Strain Fitness in Marinobacter adhaerens HP15 around HP15_1729

Experiment: m.b. Paraquat dichloride 0.0075 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1728 and HP15_1729 overlap by 1 nucleotidesHP15_1729 and HP15_1730 are separated by 16 nucleotides HP15_1728: HP15_1728 - phosphonate ABC transporter, periplasmic phosphonate-binding protein, at 1,828,327 to 1,829,175 _1728 HP15_1729: HP15_1729 - phosphonate ABC transporter, ATPase subunit, at 1,829,175 to 1,829,825 _1729 HP15_1730: HP15_1730 - binding-protein-dependent transport systems inner membrane component, at 1,829,842 to 1,831,308 _1730 Position (kb) 1829 1830Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1828.190 kb on + strandat 1828.198 kb on - strandat 1828.243 kb on - strandat 1828.305 kb on + strandat 1828.369 kb on + strandat 1828.369 kb on + strandat 1828.428 kb on + strand, within HP15_1728at 1828.428 kb on + strand, within HP15_1728at 1828.487 kb on - strand, within HP15_1728at 1828.653 kb on + strand, within HP15_1728at 1828.725 kb on - strand, within HP15_1728at 1828.873 kb on + strand, within HP15_1728at 1829.027 kb on + strand, within HP15_1728at 1829.027 kb on + strand, within HP15_1728at 1829.079 kb on + strand, within HP15_1728at 1829.087 kb on - strand, within HP15_1728at 1829.097 kb on + strandat 1829.206 kb on - strandat 1829.248 kb on + strand, within HP15_1729at 1829.368 kb on - strand, within HP15_1729at 1829.396 kb on - strand, within HP15_1729at 1829.431 kb on + strand, within HP15_1729at 1829.451 kb on - strand, within HP15_1729at 1829.451 kb on - strand, within HP15_1729at 1829.451 kb on - strand, within HP15_1729at 1829.451 kb on - strand, within HP15_1729at 1829.515 kb on - strand, within HP15_1729at 1829.598 kb on - strand, within HP15_1729at 1829.617 kb on - strand, within HP15_1729at 1829.713 kb on - strand, within HP15_1729at 1829.827 kb on - strandat 1829.841 kb on + strandat 1829.931 kb on + strandat 1830.018 kb on + strand, within HP15_1730at 1830.052 kb on + strand, within HP15_1730at 1830.052 kb on + strand, within HP15_1730at 1830.052 kb on + strand, within HP15_1730at 1830.055 kb on - strand, within HP15_1730at 1830.060 kb on - strand, within HP15_1730at 1830.060 kb on - strand, within HP15_1730at 1830.378 kb on - strand, within HP15_1730at 1830.468 kb on + strand, within HP15_1730at 1830.539 kb on + strand, within HP15_1730at 1830.612 kb on - strand, within HP15_1730at 1830.807 kb on - strand, within HP15_1730

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml
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1,828,190 + -0.2
1,828,198 - -1.3
1,828,243 - +2.5
1,828,305 + -1.2
1,828,369 + -1.9
1,828,369 + -0.1
1,828,428 + HP15_1728 0.12 +1.8
1,828,428 + HP15_1728 0.12 -1.8
1,828,487 - HP15_1728 0.19 +1.1
1,828,653 + HP15_1728 0.38 +0.6
1,828,725 - HP15_1728 0.47 +1.1
1,828,873 + HP15_1728 0.64 -1.7
1,829,027 + HP15_1728 0.82 +0.7
1,829,027 + HP15_1728 0.82 -1.5
1,829,079 + HP15_1728 0.89 +0.9
1,829,087 - HP15_1728 0.90 +0.1
1,829,097 + +0.7
1,829,206 - -0.6
1,829,248 + HP15_1729 0.11 -1.5
1,829,368 - HP15_1729 0.30 -1.0
1,829,396 - HP15_1729 0.34 -2.1
1,829,431 + HP15_1729 0.39 -0.1
1,829,451 - HP15_1729 0.42 +1.5
1,829,451 - HP15_1729 0.42 +0.4
1,829,451 - HP15_1729 0.42 +1.3
1,829,451 - HP15_1729 0.42 +0.1
1,829,515 - HP15_1729 0.52 -0.3
1,829,598 - HP15_1729 0.65 -1.0
1,829,617 - HP15_1729 0.68 -1.7
1,829,713 - HP15_1729 0.83 -1.7
1,829,827 - +0.1
1,829,841 + -1.3
1,829,931 + +1.8
1,830,018 + HP15_1730 0.12 +3.1
1,830,052 + HP15_1730 0.14 +0.9
1,830,052 + HP15_1730 0.14 +0.4
1,830,052 + HP15_1730 0.14 -1.9
1,830,055 - HP15_1730 0.15 +0.4
1,830,060 - HP15_1730 0.15 -1.9
1,830,060 - HP15_1730 0.15 +0.0
1,830,378 - HP15_1730 0.37 -0.4
1,830,468 + HP15_1730 0.43 +0.1
1,830,539 + HP15_1730 0.48 +0.7
1,830,612 - HP15_1730 0.52 -0.1
1,830,807 - HP15_1730 0.66 +0.7

Or see this region's nucleotide sequence