Strain Fitness in Marinobacter adhaerens HP15 around HP15_173

Experiment: m.b. Paraquat dichloride 0.0075 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_171 and HP15_170 are separated by 45 nucleotidesHP15_170 and HP15_172 are separated by 41 nucleotidesHP15_172 and HP15_173 overlap by 17 nucleotidesHP15_173 and HP15_174 are separated by 202 nucleotides HP15_171: HP15_171 - cytochrome c, class I-like protein, at 163,945 to 164,073 _171 HP15_170: HP15_170 - hypothetical protein, at 164,119 to 164,322 _170 HP15_172: HP15_172 - protein-S-isoprenylcysteine methyltransferase, at 164,364 to 165,032 _172 HP15_173: HP15_173 - secreted protein, at 165,016 to 165,189 _173 HP15_174: HP15_174 - conserved hypothetical protein, at 165,392 to 166,684 _174 Position (kb) 165 166Strain fitness (log2 ratio) -2 -1 0 1 2 3at 164.030 kb on + strand, within HP15_171at 164.038 kb on - strand, within HP15_171at 164.038 kb on - strand, within HP15_171at 164.038 kb on - strand, within HP15_171at 164.128 kb on + strandat 164.141 kb on - strand, within HP15_170at 164.242 kb on + strand, within HP15_170at 164.255 kb on - strand, within HP15_170at 164.258 kb on + strand, within HP15_170at 164.264 kb on + strand, within HP15_170at 164.264 kb on + strand, within HP15_170at 164.266 kb on + strand, within HP15_170at 164.269 kb on + strand, within HP15_170at 164.272 kb on - strand, within HP15_170at 164.272 kb on - strand, within HP15_170at 164.274 kb on + strand, within HP15_170at 164.276 kb on + strand, within HP15_170at 164.282 kb on - strand, within HP15_170at 164.291 kb on + strand, within HP15_170at 164.295 kb on - strand, within HP15_170at 164.432 kb on - strand, within HP15_172at 164.514 kb on - strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.543 kb on + strand, within HP15_172at 164.551 kb on - strand, within HP15_172at 164.551 kb on - strand, within HP15_172at 164.561 kb on - strand, within HP15_172at 164.656 kb on + strand, within HP15_172at 164.664 kb on - strand, within HP15_172at 164.675 kb on - strand, within HP15_172at 164.703 kb on + strand, within HP15_172at 164.759 kb on - strand, within HP15_172at 164.787 kb on + strand, within HP15_172at 164.787 kb on + strand, within HP15_172at 164.820 kb on + strand, within HP15_172at 164.939 kb on - strand, within HP15_172at 165.036 kb on + strand, within HP15_173at 165.044 kb on - strand, within HP15_173at 165.044 kb on - strand, within HP15_173at 165.057 kb on + strand, within HP15_173at 165.076 kb on + strand, within HP15_173at 165.084 kb on - strand, within HP15_173at 165.096 kb on - strand, within HP15_173at 165.135 kb on - strand, within HP15_173at 165.135 kb on - strand, within HP15_173at 165.167 kb on + strand, within HP15_173at 165.174 kb on + strandat 165.184 kb on + strandat 165.184 kb on + strandat 165.185 kb on + strandat 165.193 kb on - strandat 165.193 kb on - strandat 165.298 kb on - strandat 165.305 kb on - strandat 165.311 kb on - strandat 165.377 kb on + strandat 165.425 kb on + strandat 165.433 kb on - strandat 165.478 kb on - strandat 165.479 kb on - strandat 165.551 kb on - strand, within HP15_174at 165.646 kb on + strand, within HP15_174at 165.676 kb on - strand, within HP15_174at 165.676 kb on - strand, within HP15_174at 165.712 kb on + strand, within HP15_174at 165.764 kb on - strand, within HP15_174at 165.809 kb on + strand, within HP15_174at 165.809 kb on + strand, within HP15_174at 165.817 kb on - strand, within HP15_174at 165.822 kb on - strand, within HP15_174at 165.834 kb on + strand, within HP15_174at 165.842 kb on - strand, within HP15_174at 165.842 kb on - strand, within HP15_174at 165.862 kb on + strand, within HP15_174at 165.867 kb on + strand, within HP15_174at 165.933 kb on + strand, within HP15_174at 165.962 kb on + strand, within HP15_174at 166.039 kb on + strand, within HP15_174at 166.046 kb on - strand, within HP15_174at 166.069 kb on + strand, within HP15_174at 166.102 kb on + strand, within HP15_174at 166.121 kb on + strand, within HP15_174at 166.121 kb on + strand, within HP15_174at 166.121 kb on + strand, within HP15_174at 166.129 kb on - strand, within HP15_174at 166.129 kb on - strand, within HP15_174

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml
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164,030 + HP15_171 0.66 -0.6
164,038 - HP15_171 0.72 -0.3
164,038 - HP15_171 0.72 +0.2
164,038 - HP15_171 0.72 -0.7
164,128 + +1.1
164,141 - HP15_170 0.11 +0.1
164,242 + HP15_170 0.60 +0.8
164,255 - HP15_170 0.67 +2.4
164,258 + HP15_170 0.68 -0.7
164,264 + HP15_170 0.71 -0.4
164,264 + HP15_170 0.71 -0.9
164,266 + HP15_170 0.72 +0.1
164,269 + HP15_170 0.74 -0.5
164,272 - HP15_170 0.75 +0.3
164,272 - HP15_170 0.75 -1.6
164,274 + HP15_170 0.76 +2.0
164,276 + HP15_170 0.77 -1.1
164,282 - HP15_170 0.80 -0.6
164,291 + HP15_170 0.84 +0.4
164,295 - HP15_170 0.86 +0.1
164,432 - HP15_172 0.10 -0.5
164,514 - HP15_172 0.22 +2.1
164,543 + HP15_172 0.27 -0.8
164,543 + HP15_172 0.27 -1.0
164,543 + HP15_172 0.27 -0.8
164,543 + HP15_172 0.27 -0.5
164,543 + HP15_172 0.27 +0.1
164,551 - HP15_172 0.28 -0.8
164,551 - HP15_172 0.28 -0.6
164,561 - HP15_172 0.29 +3.4
164,656 + HP15_172 0.44 +0.6
164,664 - HP15_172 0.45 -0.1
164,675 - HP15_172 0.46 +1.3
164,703 + HP15_172 0.51 -1.5
164,759 - HP15_172 0.59 -0.6
164,787 + HP15_172 0.63 -0.3
164,787 + HP15_172 0.63 -0.8
164,820 + HP15_172 0.68 -0.7
164,939 - HP15_172 0.86 -1.9
165,036 + HP15_173 0.11 -0.5
165,044 - HP15_173 0.16 -0.5
165,044 - HP15_173 0.16 +3.4
165,057 + HP15_173 0.24 -1.0
165,076 + HP15_173 0.34 -1.1
165,084 - HP15_173 0.39 +0.6
165,096 - HP15_173 0.46 -0.4
165,135 - HP15_173 0.68 -0.9
165,135 - HP15_173 0.68 +2.4
165,167 + HP15_173 0.87 -0.9
165,174 + -0.3
165,184 + -0.7
165,184 + +0.7
165,185 + -0.5
165,193 - +2.4
165,193 - +0.0
165,298 - +1.9
165,305 - -0.1
165,311 - -2.2
165,377 + -0.3
165,425 + -0.3
165,433 - -0.2
165,478 - -0.4
165,479 - +0.7
165,551 - HP15_174 0.12 +0.2
165,646 + HP15_174 0.20 -0.4
165,676 - HP15_174 0.22 +0.1
165,676 - HP15_174 0.22 -2.7
165,712 + HP15_174 0.25 -0.2
165,764 - HP15_174 0.29 -0.8
165,809 + HP15_174 0.32 -2.5
165,809 + HP15_174 0.32 -0.0
165,817 - HP15_174 0.33 -1.7
165,822 - HP15_174 0.33 +0.6
165,834 + HP15_174 0.34 +1.0
165,842 - HP15_174 0.35 +1.4
165,842 - HP15_174 0.35 +0.2
165,862 + HP15_174 0.36 -2.3
165,867 + HP15_174 0.37 -1.0
165,933 + HP15_174 0.42 -0.2
165,962 + HP15_174 0.44 +0.5
166,039 + HP15_174 0.50 -0.9
166,046 - HP15_174 0.51 +1.4
166,069 + HP15_174 0.52 +1.1
166,102 + HP15_174 0.55 +0.2
166,121 + HP15_174 0.56 +0.6
166,121 + HP15_174 0.56 +0.7
166,121 + HP15_174 0.56 +0.4
166,129 - HP15_174 0.57 +0.3
166,129 - HP15_174 0.57 +1.8

Or see this region's nucleotide sequence