Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_166 and HP15_167 are separated by 273 nucleotides HP15_167 and HP15_168 are separated by 672 nucleotides HP15_168 and HP15_169 are separated by 87 nucleotides
HP15_166: HP15_166 - cation efflux system protein, at 161,207 to 162,103
_166
HP15_167: HP15_167 - methionine-rich hypothetical protein, at 162,377 to 162,736
_167
HP15_168: HP15_168 - conserved hypothetical protein, at 163,409 to 163,513
_168
HP15_169: HP15_169 - hypothetical protein, at 163,601 to 163,714
_169
Position (kb) 162
163 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 161.391 kb on + strand, within HP15_166 at 161.407 kb on - strand, within HP15_166 at 161.565 kb on + strand, within HP15_166 at 161.565 kb on + strand, within HP15_166 at 161.565 kb on + strand, within HP15_166 at 161.565 kb on + strand, within HP15_166 at 161.565 kb on + strand, within HP15_166 at 161.573 kb on - strand, within HP15_166 at 161.573 kb on - strand, within HP15_166 at 161.573 kb on - strand, within HP15_166 at 161.776 kb on + strand, within HP15_166 at 161.779 kb on - strand, within HP15_166 at 161.814 kb on - strand, within HP15_166 at 161.814 kb on - strand, within HP15_166 at 161.833 kb on + strand, within HP15_166 at 161.887 kb on + strand, within HP15_166 at 161.933 kb on + strand, within HP15_166 at 161.997 kb on + strand, within HP15_166 at 161.997 kb on + strand, within HP15_166 at 162.005 kb on - strand, within HP15_166 at 162.038 kb on - strand at 162.080 kb on - strand at 162.082 kb on + strand at 162.082 kb on + strand at 162.183 kb on - strand at 162.239 kb on + strand at 162.307 kb on + strand at 162.344 kb on + strand at 162.344 kb on + strand at 162.410 kb on + strand at 162.410 kb on + strand at 162.458 kb on - strand, within HP15_167 at 162.475 kb on - strand, within HP15_167 at 162.564 kb on + strand, within HP15_167 at 162.564 kb on + strand, within HP15_167 at 162.621 kb on - strand, within HP15_167 at 162.682 kb on - strand, within HP15_167 at 162.682 kb on - strand, within HP15_167 at 162.838 kb on + strand at 162.838 kb on + strand at 162.846 kb on - strand at 162.925 kb on + strand at 162.925 kb on + strand at 162.925 kb on + strand at 162.925 kb on + strand at 162.925 kb on + strand at 162.933 kb on - strand at 162.967 kb on - strand at 162.987 kb on + strand at 163.301 kb on - strand at 163.327 kb on + strand at 163.327 kb on + strand at 163.327 kb on + strand at 163.334 kb on + strand at 163.334 kb on + strand at 163.335 kb on - strand at 163.335 kb on - strand at 163.335 kb on - strand at 163.342 kb on - strand at 163.352 kb on - strand at 163.459 kb on + strand, within HP15_168 at 163.460 kb on + strand, within HP15_168 at 163.471 kb on + strand, within HP15_168 at 163.471 kb on + strand, within HP15_168 at 163.471 kb on + strand, within HP15_168 at 163.478 kb on + strand, within HP15_168 at 163.478 kb on - strand, within HP15_168 at 163.508 kb on + strand at 163.516 kb on - strand at 163.562 kb on + strand at 163.562 kb on + strand at 163.562 kb on + strand at 163.570 kb on - strand at 163.570 kb on - strand at 163.606 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 161,391 + HP15_166 0.21 +0.1 161,407 - HP15_166 0.22 +0.4 161,565 + HP15_166 0.40 +0.0 161,565 + HP15_166 0.40 -1.0 161,565 + HP15_166 0.40 +0.6 161,565 + HP15_166 0.40 -0.2 161,565 + HP15_166 0.40 +1.4 161,573 - HP15_166 0.41 +2.4 161,573 - HP15_166 0.41 +0.5 161,573 - HP15_166 0.41 +1.1 161,776 + HP15_166 0.63 +0.9 161,779 - HP15_166 0.64 -0.6 161,814 - HP15_166 0.68 +1.1 161,814 - HP15_166 0.68 +2.0 161,833 + HP15_166 0.70 +1.4 161,887 + HP15_166 0.76 -0.7 161,933 + HP15_166 0.81 +0.6 161,997 + HP15_166 0.88 +1.0 161,997 + HP15_166 0.88 +3.4 162,005 - HP15_166 0.89 -0.4 162,038 - +0.9 162,080 - +0.1 162,082 + -2.7 162,082 + -0.8 162,183 - -0.7 162,239 + +0.5 162,307 + -0.6 162,344 + -0.0 162,344 + +0.8 162,410 + -0.3 162,410 + +0.9 162,458 - HP15_167 0.23 +1.1 162,475 - HP15_167 0.27 +2.1 162,564 + HP15_167 0.52 +0.4 162,564 + HP15_167 0.52 +0.8 162,621 - HP15_167 0.68 -1.0 162,682 - HP15_167 0.85 -0.1 162,682 - HP15_167 0.85 +0.6 162,838 + -0.2 162,838 + -1.3 162,846 - -0.7 162,925 + -0.3 162,925 + +0.4 162,925 + -0.6 162,925 + +1.0 162,925 + +0.2 162,933 - +0.8 162,967 - +0.4 162,987 + +1.4 163,301 - -0.6 163,327 + -0.5 163,327 + -0.0 163,327 + +0.5 163,334 + -0.8 163,334 + -0.3 163,335 - +0.2 163,335 - +0.1 163,335 - -0.3 163,342 - +0.9 163,352 - +0.6 163,459 + HP15_168 0.48 +1.2 163,460 + HP15_168 0.49 +0.3 163,471 + HP15_168 0.59 +0.6 163,471 + HP15_168 0.59 +6.0 163,471 + HP15_168 0.59 +1.6 163,478 + HP15_168 0.66 +0.4 163,478 - HP15_168 0.66 +0.1 163,508 + -0.6 163,516 - -2.4 163,562 + -1.9 163,562 + -0.9 163,562 + -0.2 163,570 - -1.4 163,570 - +0.8 163,606 + +1.1
Or see this region's nucleotide sequence