Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1540 and HP15_1541 are separated by 4 nucleotides HP15_1541 and HP15_1542 are separated by 24 nucleotides HP15_1542 and HP15_1543 overlap by 4 nucleotides HP15_1543 and HP15_1544 are separated by 38 nucleotides HP15_1544 and HP15_1545 are separated by 7 nucleotides
HP15_1540: HP15_1540 - protein YfcK, at 1,624,843 to 1,626,741
_1540
HP15_1541: HP15_1541 - peptidyl-prolyl cis-trans isomerase, cyclophilin type, at 1,626,746 to 1,627,357
_1541
HP15_1542: HP15_1542 - hypothetical protein, at 1,627,382 to 1,627,588
_1542
HP15_1543: HP15_1543 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,627,585 to 1,628,334
_1543
HP15_1544: HP15_1544 - flagella synthesis protein FlgN, at 1,628,373 to 1,628,843
_1544
HP15_1545: HP15_1545 - anti-sigma-28 factor, FlgM, at 1,628,851 to 1,629,177
_1545
Position (kb)
1627
1628
1629 Strain fitness (log2 ratio)
-1
0
1
2 at 1626.646 kb on + strand at 1626.697 kb on - strand at 1626.707 kb on - strand at 1626.751 kb on - strand at 1626.858 kb on + strand, within HP15_1541 at 1626.900 kb on - strand, within HP15_1541 at 1627.230 kb on + strand, within HP15_1541 at 1627.247 kb on + strand, within HP15_1541 at 1627.483 kb on - strand, within HP15_1542 at 1627.499 kb on + strand, within HP15_1542 at 1627.665 kb on + strand, within HP15_1543 at 1627.684 kb on - strand, within HP15_1543 at 1627.685 kb on - strand, within HP15_1543 at 1627.740 kb on - strand, within HP15_1543 at 1627.779 kb on - strand, within HP15_1543 at 1627.808 kb on - strand, within HP15_1543 at 1628.139 kb on + strand, within HP15_1543 at 1628.242 kb on - strand, within HP15_1543 at 1628.328 kb on - strand at 1628.395 kb on - strand at 1628.428 kb on - strand, within HP15_1544 at 1628.562 kb on + strand, within HP15_1544 at 1628.686 kb on + strand, within HP15_1544 at 1628.694 kb on - strand, within HP15_1544 at 1628.694 kb on - strand, within HP15_1544 at 1628.727 kb on - strand, within HP15_1544 at 1628.752 kb on - strand, within HP15_1544 at 1628.785 kb on + strand, within HP15_1544 at 1629.050 kb on + strand, within HP15_1545 at 1629.134 kb on + strand, within HP15_1545 at 1629.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 1,626,646 + +1.5 1,626,697 - +0.3 1,626,707 - +0.2 1,626,751 - +0.5 1,626,858 + HP15_1541 0.18 +1.4 1,626,900 - HP15_1541 0.25 -1.3 1,627,230 + HP15_1541 0.79 +2.3 1,627,247 + HP15_1541 0.82 +2.5 1,627,483 - HP15_1542 0.49 +0.7 1,627,499 + HP15_1542 0.57 +0.7 1,627,665 + HP15_1543 0.11 -0.5 1,627,684 - HP15_1543 0.13 -0.4 1,627,685 - HP15_1543 0.13 +0.3 1,627,740 - HP15_1543 0.21 -0.9 1,627,779 - HP15_1543 0.26 -0.1 1,627,808 - HP15_1543 0.30 +0.9 1,628,139 + HP15_1543 0.74 +0.5 1,628,242 - HP15_1543 0.88 -0.5 1,628,328 - +0.1 1,628,395 - +0.7 1,628,428 - HP15_1544 0.12 +0.6 1,628,562 + HP15_1544 0.40 +0.7 1,628,686 + HP15_1544 0.66 -0.3 1,628,694 - HP15_1544 0.68 +0.4 1,628,694 - HP15_1544 0.68 -1.3 1,628,727 - HP15_1544 0.75 -0.7 1,628,752 - HP15_1544 0.80 +0.7 1,628,785 + HP15_1544 0.87 +1.4 1,629,050 + HP15_1545 0.61 +1.8 1,629,134 + HP15_1545 0.87 -0.2 1,629,186 - -0.4
Or see this region's nucleotide sequence