Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1449 and HP15_1450 are separated by 9 nucleotides HP15_1450 and HP15_1451 are separated by 66 nucleotides HP15_1451 and HP15_1452 are separated by 133 nucleotides HP15_1452 and HP15_1453 overlap by 12 nucleotides
HP15_1449: HP15_1449 - ABC transporter, ATP-binding protein, at 1,525,184 to 1,525,978
_1449
HP15_1450: HP15_1450 - inner-membrane translocator, at 1,525,988 to 1,526,890
_1450
HP15_1451: HP15_1451 - ABC-type uncharacterized transport system, periplasmic component, at 1,526,957 to 1,527,931
_1451
HP15_1452: HP15_1452 - hypothetical protein, at 1,528,065 to 1,528,214
_1452
HP15_1453: HP15_1453 - long-chain acyl-CoA synthetase, at 1,528,203 to 1,529,840
_1453
Position (kb)
1526
1527
1528 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1526.026 kb on + strand at 1526.053 kb on + strand at 1526.190 kb on - strand, within HP15_1450 at 1526.230 kb on + strand, within HP15_1450 at 1526.276 kb on - strand, within HP15_1450 at 1526.316 kb on - strand, within HP15_1450 at 1526.506 kb on + strand, within HP15_1450 at 1526.594 kb on - strand, within HP15_1450 at 1526.611 kb on + strand, within HP15_1450 at 1526.725 kb on + strand, within HP15_1450 at 1526.838 kb on + strand at 1527.177 kb on - strand, within HP15_1451 at 1527.305 kb on - strand, within HP15_1451 at 1527.323 kb on + strand, within HP15_1451 at 1527.354 kb on + strand, within HP15_1451 at 1527.364 kb on + strand, within HP15_1451 at 1527.372 kb on - strand, within HP15_1451 at 1527.372 kb on - strand, within HP15_1451 at 1527.372 kb on - strand, within HP15_1451 at 1527.434 kb on + strand, within HP15_1451 at 1527.434 kb on + strand, within HP15_1451 at 1527.434 kb on + strand, within HP15_1451 at 1527.442 kb on - strand, within HP15_1451 at 1527.608 kb on + strand, within HP15_1451 at 1527.742 kb on + strand, within HP15_1451 at 1527.757 kb on - strand, within HP15_1451 at 1527.760 kb on + strand, within HP15_1451 at 1527.799 kb on + strand, within HP15_1451 at 1527.821 kb on + strand, within HP15_1451 at 1527.905 kb on - strand at 1527.905 kb on - strand at 1527.911 kb on + strand at 1527.916 kb on + strand at 1527.921 kb on + strand at 1527.940 kb on - strand at 1528.010 kb on + strand at 1528.290 kb on - strand at 1528.447 kb on + strand, within HP15_1453 at 1528.454 kb on + strand, within HP15_1453 at 1528.617 kb on - strand, within HP15_1453 at 1528.661 kb on - strand, within HP15_1453 at 1528.720 kb on - strand, within HP15_1453 at 1528.750 kb on + strand, within HP15_1453 at 1528.773 kb on - strand, within HP15_1453 at 1528.824 kb on + strand, within HP15_1453
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 1,526,026 + +2.2 1,526,053 + +0.1 1,526,190 - HP15_1450 0.22 +0.7 1,526,230 + HP15_1450 0.27 +1.3 1,526,276 - HP15_1450 0.32 -0.5 1,526,316 - HP15_1450 0.36 +0.6 1,526,506 + HP15_1450 0.57 +0.6 1,526,594 - HP15_1450 0.67 -1.3 1,526,611 + HP15_1450 0.69 +0.5 1,526,725 + HP15_1450 0.82 -0.2 1,526,838 + -0.2 1,527,177 - HP15_1451 0.23 -1.3 1,527,305 - HP15_1451 0.36 +0.4 1,527,323 + HP15_1451 0.38 +0.2 1,527,354 + HP15_1451 0.41 -1.3 1,527,364 + HP15_1451 0.42 +1.6 1,527,372 - HP15_1451 0.43 +0.4 1,527,372 - HP15_1451 0.43 -1.0 1,527,372 - HP15_1451 0.43 +0.9 1,527,434 + HP15_1451 0.49 +1.0 1,527,434 + HP15_1451 0.49 +3.3 1,527,434 + HP15_1451 0.49 -0.1 1,527,442 - HP15_1451 0.50 -0.0 1,527,608 + HP15_1451 0.67 +2.4 1,527,742 + HP15_1451 0.81 +0.8 1,527,757 - HP15_1451 0.82 -0.2 1,527,760 + HP15_1451 0.82 +1.7 1,527,799 + HP15_1451 0.86 +1.5 1,527,821 + HP15_1451 0.89 -0.4 1,527,905 - -0.3 1,527,905 - -1.1 1,527,911 + -1.2 1,527,916 + +1.1 1,527,921 + +1.5 1,527,940 - +0.8 1,528,010 + +2.4 1,528,290 - +0.7 1,528,447 + HP15_1453 0.15 +2.1 1,528,454 + HP15_1453 0.15 +0.8 1,528,617 - HP15_1453 0.25 -1.4 1,528,661 - HP15_1453 0.28 +0.1 1,528,720 - HP15_1453 0.32 +0.5 1,528,750 + HP15_1453 0.33 -1.3 1,528,773 - HP15_1453 0.35 -1.6 1,528,824 + HP15_1453 0.38 -0.8
Or see this region's nucleotide sequence