Strain Fitness in Marinobacter adhaerens HP15 around HP15_1292

Experiment: m.b. Paraquat dichloride 0.0075 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1290 and HP15_1291 are separated by 184 nucleotidesHP15_1291 and HP15_1292 are separated by 45 nucleotidesHP15_1292 and HP15_1293 are separated by 159 nucleotides HP15_1290: HP15_1290 - electron transport complex, RnfABCDGE type, B subunit, at 1,350,445 to 1,350,867 _1290 HP15_1291: HP15_1291 - electron transport complex, RnfA, at 1,351,052 to 1,351,633 _1291 HP15_1292: HP15_1292 - methionyl-tRNA synthetase, at 1,351,679 to 1,353,709 _1292 HP15_1293: HP15_1293 - iron sulfur binding protein, at 1,353,869 to 1,355,008 _1293 Position (kb) 1351 1352 1353 1354Strain fitness (log2 ratio) -1 0 1 2 3at 1350.712 kb on - strand, within HP15_1290at 1350.924 kb on - strandat 1350.928 kb on + strandat 1350.936 kb on - strandat 1350.936 kb on - strandat 1350.936 kb on - strandat 1350.936 kb on - strandat 1351.280 kb on + strand, within HP15_1291at 1351.280 kb on + strand, within HP15_1291at 1351.280 kb on + strand, within HP15_1291at 1351.406 kb on + strand, within HP15_1291at 1351.413 kb on + strand, within HP15_1291at 1351.459 kb on - strand, within HP15_1291at 1351.553 kb on - strand, within HP15_1291at 1351.569 kb on + strand, within HP15_1291at 1351.602 kb on + strandat 1351.684 kb on - strandat 1353.980 kb on - strandat 1354.019 kb on - strand, within HP15_1293at 1354.059 kb on + strand, within HP15_1293at 1354.059 kb on - strand, within HP15_1293at 1354.228 kb on + strand, within HP15_1293at 1354.228 kb on + strand, within HP15_1293at 1354.270 kb on + strand, within HP15_1293at 1354.421 kb on - strand, within HP15_1293at 1354.479 kb on + strand, within HP15_1293at 1354.487 kb on - strand, within HP15_1293at 1354.487 kb on - strand, within HP15_1293at 1354.591 kb on + strand, within HP15_1293at 1354.632 kb on + strand, within HP15_1293

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml
remove
1,350,712 - HP15_1290 0.63 +0.2
1,350,924 - +0.5
1,350,928 + +1.5
1,350,936 - +1.8
1,350,936 - +1.7
1,350,936 - +1.7
1,350,936 - +1.9
1,351,280 + HP15_1291 0.39 +3.1
1,351,280 + HP15_1291 0.39 +3.4
1,351,280 + HP15_1291 0.39 +2.4
1,351,406 + HP15_1291 0.61 +1.2
1,351,413 + HP15_1291 0.62 +1.8
1,351,459 - HP15_1291 0.70 +0.8
1,351,553 - HP15_1291 0.86 +1.3
1,351,569 + HP15_1291 0.89 +0.7
1,351,602 + +2.3
1,351,684 - -0.1
1,353,980 - -0.8
1,354,019 - HP15_1293 0.13 -0.2
1,354,059 + HP15_1293 0.17 +1.3
1,354,059 - HP15_1293 0.17 +0.7
1,354,228 + HP15_1293 0.31 +0.8
1,354,228 + HP15_1293 0.31 +1.6
1,354,270 + HP15_1293 0.35 +1.8
1,354,421 - HP15_1293 0.48 +1.5
1,354,479 + HP15_1293 0.54 +0.8
1,354,487 - HP15_1293 0.54 +0.7
1,354,487 - HP15_1293 0.54 +1.7
1,354,591 + HP15_1293 0.63 -1.3
1,354,632 + HP15_1293 0.67 +0.5

Or see this region's nucleotide sequence