Strain Fitness in Marinobacter adhaerens HP15 around HP15_952

Experiment: m.b. Paraquat dichloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_951 and HP15_952 are separated by 88 nucleotidesHP15_952 and HP15_953 are separated by 58 nucleotides HP15_951: HP15_951 - transcriptional regulator, AraC family protein, at 966,940 to 967,950 _951 HP15_952: HP15_952 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein, at 968,039 to 969,652 _952 HP15_953: HP15_953 - protein containing thiamine pyrophosphate enzyme, C-terminal TPP-binding / Thiamine pyrophosphate enzyme, N-terminal TPP binding region, at 969,711 to 971,369 _953 Position (kb) 968 969 970Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 967.106 kb on + strand, within HP15_951at 967.134 kb on - strand, within HP15_951at 967.135 kb on - strand, within HP15_951at 967.188 kb on - strand, within HP15_951at 967.212 kb on - strand, within HP15_951at 967.217 kb on - strand, within HP15_951at 967.294 kb on + strand, within HP15_951at 967.339 kb on - strand, within HP15_951at 967.348 kb on + strand, within HP15_951at 967.351 kb on - strand, within HP15_951at 967.397 kb on - strand, within HP15_951at 967.403 kb on + strand, within HP15_951at 967.456 kb on + strand, within HP15_951at 967.515 kb on - strand, within HP15_951at 967.519 kb on + strand, within HP15_951at 967.519 kb on + strand, within HP15_951at 967.520 kb on - strand, within HP15_951at 967.520 kb on - strand, within HP15_951at 967.527 kb on - strand, within HP15_951at 967.545 kb on + strand, within HP15_951at 967.669 kb on - strand, within HP15_951at 967.685 kb on - strand, within HP15_951at 967.782 kb on - strand, within HP15_951at 967.819 kb on + strand, within HP15_951at 967.885 kb on - strandat 967.910 kb on + strandat 967.989 kb on - strandat 968.013 kb on - strandat 968.128 kb on + strandat 968.128 kb on + strandat 968.130 kb on + strandat 968.137 kb on - strandat 968.285 kb on - strand, within HP15_952at 968.303 kb on + strand, within HP15_952at 968.362 kb on - strand, within HP15_952at 968.409 kb on - strand, within HP15_952at 968.509 kb on - strand, within HP15_952at 968.509 kb on - strand, within HP15_952at 968.692 kb on - strand, within HP15_952at 968.703 kb on + strand, within HP15_952at 968.749 kb on + strand, within HP15_952at 968.749 kb on + strand, within HP15_952at 968.757 kb on - strand, within HP15_952at 968.757 kb on - strand, within HP15_952at 968.757 kb on - strand, within HP15_952at 968.757 kb on - strand, within HP15_952at 968.859 kb on - strand, within HP15_952at 968.931 kb on + strand, within HP15_952at 968.967 kb on + strand, within HP15_952at 968.973 kb on + strand, within HP15_952at 969.012 kb on - strand, within HP15_952at 969.020 kb on + strand, within HP15_952at 969.223 kb on + strand, within HP15_952at 969.330 kb on - strand, within HP15_952at 969.372 kb on + strand, within HP15_952at 969.372 kb on + strand, within HP15_952at 969.380 kb on - strand, within HP15_952at 969.412 kb on + strand, within HP15_952at 969.604 kb on + strandat 969.612 kb on - strandat 969.612 kb on - strandat 969.612 kb on - strandat 969.656 kb on - strandat 969.704 kb on - strandat 969.848 kb on - strandat 969.859 kb on - strandat 969.939 kb on - strand, within HP15_953at 969.941 kb on + strand, within HP15_953at 969.998 kb on - strand, within HP15_953at 970.180 kb on + strand, within HP15_953at 970.202 kb on + strand, within HP15_953at 970.202 kb on + strand, within HP15_953at 970.202 kb on + strand, within HP15_953at 970.210 kb on - strand, within HP15_953at 970.226 kb on - strand, within HP15_953at 970.274 kb on + strand, within HP15_953at 970.322 kb on + strand, within HP15_953at 970.330 kb on - strand, within HP15_953at 970.398 kb on - strand, within HP15_953at 970.398 kb on - strand, within HP15_953at 970.412 kb on - strand, within HP15_953at 970.445 kb on + strand, within HP15_953at 970.453 kb on - strand, within HP15_953at 970.496 kb on - strand, within HP15_953

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml
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967,106 + HP15_951 0.16 -0.8
967,134 - HP15_951 0.19 +0.1
967,135 - HP15_951 0.19 +0.3
967,188 - HP15_951 0.25 -0.7
967,212 - HP15_951 0.27 -0.2
967,217 - HP15_951 0.27 +0.2
967,294 + HP15_951 0.35 -1.3
967,339 - HP15_951 0.39 -0.5
967,348 + HP15_951 0.40 -0.8
967,351 - HP15_951 0.41 -1.2
967,397 - HP15_951 0.45 -0.8
967,403 + HP15_951 0.46 +0.1
967,456 + HP15_951 0.51 -1.2
967,515 - HP15_951 0.57 -0.9
967,519 + HP15_951 0.57 -0.0
967,519 + HP15_951 0.57 -1.7
967,520 - HP15_951 0.57 -0.2
967,520 - HP15_951 0.57 +0.7
967,527 - HP15_951 0.58 -0.5
967,545 + HP15_951 0.60 -0.2
967,669 - HP15_951 0.72 -0.9
967,685 - HP15_951 0.74 +0.0
967,782 - HP15_951 0.83 -0.5
967,819 + HP15_951 0.87 -0.2
967,885 - -1.0
967,910 + -0.7
967,989 - +0.1
968,013 - -0.4
968,128 + -0.6
968,128 + -0.1
968,130 + +0.4
968,137 - -0.1
968,285 - HP15_952 0.15 -0.4
968,303 + HP15_952 0.16 +0.7
968,362 - HP15_952 0.20 +0.3
968,409 - HP15_952 0.23 -0.6
968,509 - HP15_952 0.29 -2.1
968,509 - HP15_952 0.29 -0.7
968,692 - HP15_952 0.40 +0.4
968,703 + HP15_952 0.41 -0.4
968,749 + HP15_952 0.44 -0.4
968,749 + HP15_952 0.44 -0.5
968,757 - HP15_952 0.44 -0.2
968,757 - HP15_952 0.44 -0.5
968,757 - HP15_952 0.44 -0.4
968,757 - HP15_952 0.44 -1.0
968,859 - HP15_952 0.51 -0.1
968,931 + HP15_952 0.55 -0.8
968,967 + HP15_952 0.57 -0.0
968,973 + HP15_952 0.58 +0.1
969,012 - HP15_952 0.60 +2.0
969,020 + HP15_952 0.61 +0.8
969,223 + HP15_952 0.73 +0.0
969,330 - HP15_952 0.80 -0.7
969,372 + HP15_952 0.83 -0.6
969,372 + HP15_952 0.83 -0.0
969,380 - HP15_952 0.83 -0.4
969,412 + HP15_952 0.85 -3.8
969,604 + -1.3
969,612 - -0.8
969,612 - +0.3
969,612 - +2.0
969,656 - -0.6
969,704 - +1.1
969,848 - -0.2
969,859 - +0.1
969,939 - HP15_953 0.14 -0.7
969,941 + HP15_953 0.14 -0.7
969,998 - HP15_953 0.17 -0.8
970,180 + HP15_953 0.28 -0.1
970,202 + HP15_953 0.30 -0.9
970,202 + HP15_953 0.30 -1.5
970,202 + HP15_953 0.30 +0.4
970,210 - HP15_953 0.30 -0.8
970,226 - HP15_953 0.31 -0.6
970,274 + HP15_953 0.34 -0.2
970,322 + HP15_953 0.37 -0.2
970,330 - HP15_953 0.37 +2.6
970,398 - HP15_953 0.41 -0.1
970,398 - HP15_953 0.41 -2.1
970,412 - HP15_953 0.42 -0.1
970,445 + HP15_953 0.44 -0.4
970,453 - HP15_953 0.45 +0.0
970,496 - HP15_953 0.47 +0.2

Or see this region's nucleotide sequence