Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07290 and PGA1_c07300 are separated by 225 nucleotides PGA1_c07300 and PGA1_c07310 are separated by 62 nucleotides
PGA1_c07290: PGA1_c07290 - transcriptional regulator, lacI family, at 750,526 to 751,527
_c07290
PGA1_c07300: PGA1_c07300 - Inositol transport system sugar-binding protein (from data) , at 751,753 to 752,703
_c07300
PGA1_c07310: PGA1_c07310 - Inositol transport system permease protein (from data) , at 752,766 to 753,887
_c07310
Position (kb)
751
752
753 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 750.904 kb on - strand, within PGA1_c07290 at 750.929 kb on + strand, within PGA1_c07290 at 750.929 kb on + strand, within PGA1_c07290 at 750.997 kb on - strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.006 kb on + strand, within PGA1_c07290 at 751.014 kb on - strand, within PGA1_c07290 at 751.014 kb on - strand, within PGA1_c07290 at 751.014 kb on - strand, within PGA1_c07290 at 751.014 kb on - strand, within PGA1_c07290 at 751.016 kb on - strand, within PGA1_c07290 at 751.016 kb on - strand, within PGA1_c07290 at 751.018 kb on + strand, within PGA1_c07290 at 751.069 kb on - strand, within PGA1_c07290 at 751.160 kb on - strand, within PGA1_c07290 at 751.165 kb on - strand, within PGA1_c07290 at 751.286 kb on - strand, within PGA1_c07290 at 751.302 kb on + strand, within PGA1_c07290 at 751.372 kb on + strand, within PGA1_c07290 at 751.388 kb on + strand, within PGA1_c07290 at 751.390 kb on + strand, within PGA1_c07290 at 751.426 kb on - strand, within PGA1_c07290 at 751.481 kb on + strand at 751.488 kb on + strand at 751.525 kb on - strand at 751.561 kb on + strand at 751.561 kb on - strand at 751.570 kb on - strand at 751.570 kb on - strand at 751.587 kb on + strand at 751.592 kb on + strand at 751.712 kb on + strand at 751.712 kb on + strand at 751.712 kb on + strand at 751.812 kb on + strand at 751.904 kb on + strand, within PGA1_c07300 at 751.934 kb on - strand, within PGA1_c07300 at 751.939 kb on - strand, within PGA1_c07300 at 751.947 kb on + strand, within PGA1_c07300 at 752.003 kb on - strand, within PGA1_c07300 at 752.040 kb on - strand, within PGA1_c07300 at 752.045 kb on + strand, within PGA1_c07300 at 752.074 kb on + strand, within PGA1_c07300 at 752.074 kb on + strand, within PGA1_c07300 at 752.074 kb on + strand, within PGA1_c07300 at 752.095 kb on - strand, within PGA1_c07300 at 752.117 kb on + strand, within PGA1_c07300 at 752.122 kb on + strand, within PGA1_c07300 at 752.148 kb on + strand, within PGA1_c07300 at 752.156 kb on - strand, within PGA1_c07300 at 752.171 kb on - strand, within PGA1_c07300 at 752.190 kb on + strand, within PGA1_c07300 at 752.239 kb on - strand, within PGA1_c07300 at 752.277 kb on + strand, within PGA1_c07300 at 752.327 kb on - strand, within PGA1_c07300 at 752.390 kb on - strand, within PGA1_c07300 at 752.413 kb on - strand, within PGA1_c07300 at 752.425 kb on + strand, within PGA1_c07300 at 752.425 kb on + strand, within PGA1_c07300 at 752.425 kb on + strand, within PGA1_c07300 at 752.426 kb on + strand, within PGA1_c07300 at 752.434 kb on - strand, within PGA1_c07300 at 752.483 kb on + strand, within PGA1_c07300 at 752.483 kb on + strand, within PGA1_c07300 at 752.483 kb on + strand, within PGA1_c07300 at 752.483 kb on + strand, within PGA1_c07300 at 752.483 kb on + strand, within PGA1_c07300 at 752.483 kb on + strand, within PGA1_c07300 at 752.491 kb on - strand, within PGA1_c07300 at 752.491 kb on - strand, within PGA1_c07300 at 752.491 kb on - strand, within PGA1_c07300 at 752.513 kb on - strand, within PGA1_c07300 at 752.527 kb on + strand, within PGA1_c07300 at 752.532 kb on + strand, within PGA1_c07300 at 752.592 kb on - strand, within PGA1_c07300 at 752.628 kb on + strand at 752.633 kb on + strand at 752.665 kb on - strand at 752.689 kb on + strand at 752.697 kb on - strand at 752.697 kb on - strand at 752.710 kb on + strand at 752.761 kb on + strand at 752.776 kb on - strand at 752.776 kb on - strand at 752.812 kb on - strand at 752.832 kb on + strand at 752.832 kb on + strand at 752.832 kb on + strand at 752.861 kb on + strand at 752.862 kb on + strand at 752.877 kb on - strand at 752.877 kb on - strand at 752.916 kb on + strand, within PGA1_c07310 at 752.916 kb on + strand, within PGA1_c07310 at 752.918 kb on + strand, within PGA1_c07310 at 752.918 kb on + strand, within PGA1_c07310 at 752.924 kb on - strand, within PGA1_c07310 at 752.926 kb on - strand, within PGA1_c07310 at 752.926 kb on - strand, within PGA1_c07310 at 752.926 kb on - strand, within PGA1_c07310 at 752.926 kb on - strand, within PGA1_c07310 at 752.979 kb on + strand, within PGA1_c07310 at 753.004 kb on - strand, within PGA1_c07310 at 753.070 kb on + strand, within PGA1_c07310 at 753.075 kb on + strand, within PGA1_c07310 at 753.075 kb on + strand, within PGA1_c07310 at 753.075 kb on + strand, within PGA1_c07310 at 753.075 kb on + strand, within PGA1_c07310 at 753.075 kb on + strand, within PGA1_c07310 at 753.075 kb on + strand, within PGA1_c07310 at 753.080 kb on + strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.083 kb on - strand, within PGA1_c07310 at 753.122 kb on + strand, within PGA1_c07310 at 753.137 kb on - strand, within PGA1_c07310 at 753.168 kb on + strand, within PGA1_c07310 at 753.168 kb on + strand, within PGA1_c07310 at 753.168 kb on + strand, within PGA1_c07310 at 753.176 kb on - strand, within PGA1_c07310 at 753.176 kb on - strand, within PGA1_c07310 at 753.189 kb on + strand, within PGA1_c07310 at 753.192 kb on - strand, within PGA1_c07310 at 753.210 kb on - strand, within PGA1_c07310 at 753.280 kb on - strand, within PGA1_c07310 at 753.288 kb on + strand, within PGA1_c07310 at 753.316 kb on - strand, within PGA1_c07310 at 753.331 kb on + strand, within PGA1_c07310 at 753.364 kb on - strand, within PGA1_c07310 at 753.404 kb on + strand, within PGA1_c07310 at 753.412 kb on - strand, within PGA1_c07310 at 753.433 kb on + strand, within PGA1_c07310 at 753.441 kb on - strand, within PGA1_c07310 at 753.441 kb on - strand, within PGA1_c07310 at 753.515 kb on + strand, within PGA1_c07310 at 753.515 kb on + strand, within PGA1_c07310 at 753.515 kb on + strand, within PGA1_c07310 at 753.532 kb on + strand, within PGA1_c07310 at 753.540 kb on - strand, within PGA1_c07310 at 753.540 kb on - strand, within PGA1_c07310 at 753.543 kb on + strand, within PGA1_c07310 at 753.551 kb on - strand, within PGA1_c07310 at 753.551 kb on - strand, within PGA1_c07310 at 753.551 kb on - strand, within PGA1_c07310 at 753.592 kb on - strand, within PGA1_c07310 at 753.596 kb on + strand, within PGA1_c07310 at 753.699 kb on + strand, within PGA1_c07310 at 753.699 kb on + strand, within PGA1_c07310
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 750,904 - PGA1_c07290 0.38 -1.4 750,929 + PGA1_c07290 0.40 +0.2 750,929 + PGA1_c07290 0.40 -0.7 750,997 - PGA1_c07290 0.47 -0.7 751,006 + PGA1_c07290 0.48 -0.2 751,006 + PGA1_c07290 0.48 -0.6 751,006 + PGA1_c07290 0.48 +0.3 751,006 + PGA1_c07290 0.48 -1.7 751,006 + PGA1_c07290 0.48 -0.4 751,006 + PGA1_c07290 0.48 +0.2 751,006 + PGA1_c07290 0.48 -0.0 751,006 + PGA1_c07290 0.48 -0.9 751,014 - PGA1_c07290 0.49 +0.3 751,014 - PGA1_c07290 0.49 +0.1 751,014 - PGA1_c07290 0.49 -0.3 751,014 - PGA1_c07290 0.49 +0.6 751,016 - PGA1_c07290 0.49 -0.1 751,016 - PGA1_c07290 0.49 -1.3 751,018 + PGA1_c07290 0.49 -1.8 751,069 - PGA1_c07290 0.54 -1.3 751,160 - PGA1_c07290 0.63 -2.8 751,165 - PGA1_c07290 0.64 -2.5 751,286 - PGA1_c07290 0.76 -1.1 751,302 + PGA1_c07290 0.77 -1.8 751,372 + PGA1_c07290 0.84 -0.6 751,388 + PGA1_c07290 0.86 -1.2 751,390 + PGA1_c07290 0.86 -1.3 751,426 - PGA1_c07290 0.90 -1.4 751,481 + -1.0 751,488 + -0.0 751,525 - -2.2 751,561 + -0.2 751,561 - -0.9 751,570 - +0.6 751,570 - +1.0 751,587 + +0.2 751,592 + -0.7 751,712 + -2.9 751,712 + -3.5 751,712 + +0.4 751,812 + +0.0 751,904 + PGA1_c07300 0.16 -0.0 751,934 - PGA1_c07300 0.19 -0.2 751,939 - PGA1_c07300 0.20 -1.6 751,947 + PGA1_c07300 0.20 -0.2 752,003 - PGA1_c07300 0.26 -0.1 752,040 - PGA1_c07300 0.30 -0.9 752,045 + PGA1_c07300 0.31 -1.2 752,074 + PGA1_c07300 0.34 +0.8 752,074 + PGA1_c07300 0.34 +0.6 752,074 + PGA1_c07300 0.34 -0.4 752,095 - PGA1_c07300 0.36 +0.6 752,117 + PGA1_c07300 0.38 +0.2 752,122 + PGA1_c07300 0.39 -1.6 752,148 + PGA1_c07300 0.42 -0.8 752,156 - PGA1_c07300 0.42 -0.0 752,171 - PGA1_c07300 0.44 -1.1 752,190 + PGA1_c07300 0.46 -1.2 752,239 - PGA1_c07300 0.51 -0.6 752,277 + PGA1_c07300 0.55 -0.5 752,327 - PGA1_c07300 0.60 -0.2 752,390 - PGA1_c07300 0.67 -0.3 752,413 - PGA1_c07300 0.69 -0.2 752,425 + PGA1_c07300 0.71 +1.0 752,425 + PGA1_c07300 0.71 +0.3 752,425 + PGA1_c07300 0.71 -0.8 752,426 + PGA1_c07300 0.71 -0.2 752,434 - PGA1_c07300 0.72 -1.2 752,483 + PGA1_c07300 0.77 +0.6 752,483 + PGA1_c07300 0.77 -0.3 752,483 + PGA1_c07300 0.77 +0.6 752,483 + PGA1_c07300 0.77 -1.0 752,483 + PGA1_c07300 0.77 -0.4 752,483 + PGA1_c07300 0.77 -1.5 752,491 - PGA1_c07300 0.78 -0.7 752,491 - PGA1_c07300 0.78 -0.2 752,491 - PGA1_c07300 0.78 -1.6 752,513 - PGA1_c07300 0.80 +0.8 752,527 + PGA1_c07300 0.81 +0.4 752,532 + PGA1_c07300 0.82 +0.3 752,592 - PGA1_c07300 0.88 -1.1 752,628 + +1.0 752,633 + +0.8 752,665 - +1.1 752,689 + -1.2 752,697 - -0.3 752,697 - -0.9 752,710 + -1.5 752,761 + -1.0 752,776 - -0.1 752,776 - +0.4 752,812 - -0.6 752,832 + -0.4 752,832 + +1.0 752,832 + -0.2 752,861 + -0.3 752,862 + -0.4 752,877 - +0.9 752,877 - -0.9 752,916 + PGA1_c07310 0.13 -0.7 752,916 + PGA1_c07310 0.13 +0.4 752,918 + PGA1_c07310 0.14 +0.3 752,918 + PGA1_c07310 0.14 +0.6 752,924 - PGA1_c07310 0.14 -1.4 752,926 - PGA1_c07310 0.14 +0.0 752,926 - PGA1_c07310 0.14 +0.4 752,926 - PGA1_c07310 0.14 -0.7 752,926 - PGA1_c07310 0.14 -0.1 752,979 + PGA1_c07310 0.19 -0.2 753,004 - PGA1_c07310 0.21 +0.1 753,070 + PGA1_c07310 0.27 -0.7 753,075 + PGA1_c07310 0.28 +0.6 753,075 + PGA1_c07310 0.28 -0.4 753,075 + PGA1_c07310 0.28 -0.6 753,075 + PGA1_c07310 0.28 -0.1 753,075 + PGA1_c07310 0.28 +0.2 753,075 + PGA1_c07310 0.28 -0.7 753,080 + PGA1_c07310 0.28 +1.2 753,083 - PGA1_c07310 0.28 -0.7 753,083 - PGA1_c07310 0.28 +0.9 753,083 - PGA1_c07310 0.28 -1.4 753,083 - PGA1_c07310 0.28 -2.0 753,083 - PGA1_c07310 0.28 -0.2 753,083 - PGA1_c07310 0.28 -0.7 753,083 - PGA1_c07310 0.28 -1.7 753,083 - PGA1_c07310 0.28 -1.0 753,122 + PGA1_c07310 0.32 -2.8 753,137 - PGA1_c07310 0.33 +0.6 753,168 + PGA1_c07310 0.36 +1.8 753,168 + PGA1_c07310 0.36 +1.0 753,168 + PGA1_c07310 0.36 -1.7 753,176 - PGA1_c07310 0.37 +0.1 753,176 - PGA1_c07310 0.37 +0.3 753,189 + PGA1_c07310 0.38 -1.0 753,192 - PGA1_c07310 0.38 +1.5 753,210 - PGA1_c07310 0.40 +0.6 753,280 - PGA1_c07310 0.46 +0.6 753,288 + PGA1_c07310 0.47 -1.9 753,316 - PGA1_c07310 0.49 -0.7 753,331 + PGA1_c07310 0.50 +0.1 753,364 - PGA1_c07310 0.53 -0.2 753,404 + PGA1_c07310 0.57 -0.9 753,412 - PGA1_c07310 0.58 +0.4 753,433 + PGA1_c07310 0.59 -1.0 753,441 - PGA1_c07310 0.60 +0.8 753,441 - PGA1_c07310 0.60 +1.2 753,515 + PGA1_c07310 0.67 +1.4 753,515 + PGA1_c07310 0.67 +0.3 753,515 + PGA1_c07310 0.67 +0.0 753,532 + PGA1_c07310 0.68 +0.2 753,540 - PGA1_c07310 0.69 -0.4 753,540 - PGA1_c07310 0.69 -0.5 753,543 + PGA1_c07310 0.69 -0.4 753,551 - PGA1_c07310 0.70 -0.1 753,551 - PGA1_c07310 0.70 -0.3 753,551 - PGA1_c07310 0.70 +0.5 753,592 - PGA1_c07310 0.74 +0.1 753,596 + PGA1_c07310 0.74 -0.2 753,699 + PGA1_c07310 0.83 -0.2 753,699 + PGA1_c07310 0.83 -0.5
Or see this region's nucleotide sequence