Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07300

Experiment: m.b. Phosphomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07290 and PGA1_c07300 are separated by 225 nucleotidesPGA1_c07300 and PGA1_c07310 are separated by 62 nucleotides PGA1_c07290: PGA1_c07290 - transcriptional regulator, lacI family, at 750,526 to 751,527 _c07290 PGA1_c07300: PGA1_c07300 - Inositol transport system sugar-binding protein (from data), at 751,753 to 752,703 _c07300 PGA1_c07310: PGA1_c07310 - Inositol transport system permease protein (from data), at 752,766 to 753,887 _c07310 Position (kb) 751 752 753Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 750.904 kb on - strand, within PGA1_c07290at 750.929 kb on + strand, within PGA1_c07290at 750.929 kb on + strand, within PGA1_c07290at 750.997 kb on - strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.014 kb on - strand, within PGA1_c07290at 751.014 kb on - strand, within PGA1_c07290at 751.014 kb on - strand, within PGA1_c07290at 751.014 kb on - strand, within PGA1_c07290at 751.016 kb on - strand, within PGA1_c07290at 751.016 kb on - strand, within PGA1_c07290at 751.018 kb on + strand, within PGA1_c07290at 751.069 kb on - strand, within PGA1_c07290at 751.160 kb on - strand, within PGA1_c07290at 751.165 kb on - strand, within PGA1_c07290at 751.286 kb on - strand, within PGA1_c07290at 751.302 kb on + strand, within PGA1_c07290at 751.372 kb on + strand, within PGA1_c07290at 751.388 kb on + strand, within PGA1_c07290at 751.390 kb on + strand, within PGA1_c07290at 751.426 kb on - strand, within PGA1_c07290at 751.481 kb on + strandat 751.488 kb on + strandat 751.525 kb on - strandat 751.561 kb on + strandat 751.561 kb on - strandat 751.570 kb on - strandat 751.570 kb on - strandat 751.587 kb on + strandat 751.592 kb on + strandat 751.712 kb on + strandat 751.712 kb on + strandat 751.712 kb on + strandat 751.812 kb on + strandat 751.904 kb on + strand, within PGA1_c07300at 751.934 kb on - strand, within PGA1_c07300at 751.939 kb on - strand, within PGA1_c07300at 751.947 kb on + strand, within PGA1_c07300at 752.003 kb on - strand, within PGA1_c07300at 752.040 kb on - strand, within PGA1_c07300at 752.045 kb on + strand, within PGA1_c07300at 752.074 kb on + strand, within PGA1_c07300at 752.074 kb on + strand, within PGA1_c07300at 752.074 kb on + strand, within PGA1_c07300at 752.095 kb on - strand, within PGA1_c07300at 752.117 kb on + strand, within PGA1_c07300at 752.122 kb on + strand, within PGA1_c07300at 752.148 kb on + strand, within PGA1_c07300at 752.156 kb on - strand, within PGA1_c07300at 752.171 kb on - strand, within PGA1_c07300at 752.190 kb on + strand, within PGA1_c07300at 752.239 kb on - strand, within PGA1_c07300at 752.277 kb on + strand, within PGA1_c07300at 752.327 kb on - strand, within PGA1_c07300at 752.390 kb on - strand, within PGA1_c07300at 752.413 kb on - strand, within PGA1_c07300at 752.425 kb on + strand, within PGA1_c07300at 752.425 kb on + strand, within PGA1_c07300at 752.425 kb on + strand, within PGA1_c07300at 752.426 kb on + strand, within PGA1_c07300at 752.434 kb on - strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.491 kb on - strand, within PGA1_c07300at 752.491 kb on - strand, within PGA1_c07300at 752.491 kb on - strand, within PGA1_c07300at 752.513 kb on - strand, within PGA1_c07300at 752.527 kb on + strand, within PGA1_c07300at 752.532 kb on + strand, within PGA1_c07300at 752.592 kb on - strand, within PGA1_c07300at 752.628 kb on + strandat 752.633 kb on + strandat 752.665 kb on - strandat 752.689 kb on + strandat 752.697 kb on - strandat 752.697 kb on - strandat 752.710 kb on + strandat 752.761 kb on + strandat 752.776 kb on - strandat 752.776 kb on - strandat 752.812 kb on - strandat 752.832 kb on + strandat 752.832 kb on + strandat 752.832 kb on + strandat 752.861 kb on + strandat 752.862 kb on + strandat 752.877 kb on - strandat 752.877 kb on - strandat 752.916 kb on + strand, within PGA1_c07310at 752.916 kb on + strand, within PGA1_c07310at 752.918 kb on + strand, within PGA1_c07310at 752.918 kb on + strand, within PGA1_c07310at 752.924 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.926 kb on - strand, within PGA1_c07310at 752.979 kb on + strand, within PGA1_c07310at 753.004 kb on - strand, within PGA1_c07310at 753.070 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.075 kb on + strand, within PGA1_c07310at 753.080 kb on + strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.083 kb on - strand, within PGA1_c07310at 753.122 kb on + strand, within PGA1_c07310at 753.137 kb on - strand, within PGA1_c07310at 753.168 kb on + strand, within PGA1_c07310at 753.168 kb on + strand, within PGA1_c07310at 753.168 kb on + strand, within PGA1_c07310at 753.176 kb on - strand, within PGA1_c07310at 753.176 kb on - strand, within PGA1_c07310at 753.189 kb on + strand, within PGA1_c07310at 753.192 kb on - strand, within PGA1_c07310at 753.210 kb on - strand, within PGA1_c07310at 753.280 kb on - strand, within PGA1_c07310at 753.288 kb on + strand, within PGA1_c07310at 753.316 kb on - strand, within PGA1_c07310at 753.331 kb on + strand, within PGA1_c07310at 753.364 kb on - strand, within PGA1_c07310at 753.404 kb on + strand, within PGA1_c07310at 753.412 kb on - strand, within PGA1_c07310at 753.433 kb on + strand, within PGA1_c07310at 753.441 kb on - strand, within PGA1_c07310at 753.441 kb on - strand, within PGA1_c07310at 753.515 kb on + strand, within PGA1_c07310at 753.515 kb on + strand, within PGA1_c07310at 753.515 kb on + strand, within PGA1_c07310at 753.532 kb on + strand, within PGA1_c07310at 753.540 kb on - strand, within PGA1_c07310at 753.540 kb on - strand, within PGA1_c07310at 753.543 kb on + strand, within PGA1_c07310at 753.551 kb on - strand, within PGA1_c07310at 753.551 kb on - strand, within PGA1_c07310at 753.551 kb on - strand, within PGA1_c07310at 753.592 kb on - strand, within PGA1_c07310at 753.596 kb on + strand, within PGA1_c07310at 753.699 kb on + strand, within PGA1_c07310at 753.699 kb on + strand, within PGA1_c07310

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml
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750,904 - PGA1_c07290 0.38 -1.4
750,929 + PGA1_c07290 0.40 +0.2
750,929 + PGA1_c07290 0.40 -0.7
750,997 - PGA1_c07290 0.47 -0.7
751,006 + PGA1_c07290 0.48 -0.2
751,006 + PGA1_c07290 0.48 -0.6
751,006 + PGA1_c07290 0.48 +0.3
751,006 + PGA1_c07290 0.48 -1.7
751,006 + PGA1_c07290 0.48 -0.4
751,006 + PGA1_c07290 0.48 +0.2
751,006 + PGA1_c07290 0.48 -0.0
751,006 + PGA1_c07290 0.48 -0.9
751,014 - PGA1_c07290 0.49 +0.3
751,014 - PGA1_c07290 0.49 +0.1
751,014 - PGA1_c07290 0.49 -0.3
751,014 - PGA1_c07290 0.49 +0.6
751,016 - PGA1_c07290 0.49 -0.1
751,016 - PGA1_c07290 0.49 -1.3
751,018 + PGA1_c07290 0.49 -1.8
751,069 - PGA1_c07290 0.54 -1.3
751,160 - PGA1_c07290 0.63 -2.8
751,165 - PGA1_c07290 0.64 -2.5
751,286 - PGA1_c07290 0.76 -1.1
751,302 + PGA1_c07290 0.77 -1.8
751,372 + PGA1_c07290 0.84 -0.6
751,388 + PGA1_c07290 0.86 -1.2
751,390 + PGA1_c07290 0.86 -1.3
751,426 - PGA1_c07290 0.90 -1.4
751,481 + -1.0
751,488 + -0.0
751,525 - -2.2
751,561 + -0.2
751,561 - -0.9
751,570 - +0.6
751,570 - +1.0
751,587 + +0.2
751,592 + -0.7
751,712 + -2.9
751,712 + -3.5
751,712 + +0.4
751,812 + +0.0
751,904 + PGA1_c07300 0.16 -0.0
751,934 - PGA1_c07300 0.19 -0.2
751,939 - PGA1_c07300 0.20 -1.6
751,947 + PGA1_c07300 0.20 -0.2
752,003 - PGA1_c07300 0.26 -0.1
752,040 - PGA1_c07300 0.30 -0.9
752,045 + PGA1_c07300 0.31 -1.2
752,074 + PGA1_c07300 0.34 +0.8
752,074 + PGA1_c07300 0.34 +0.6
752,074 + PGA1_c07300 0.34 -0.4
752,095 - PGA1_c07300 0.36 +0.6
752,117 + PGA1_c07300 0.38 +0.2
752,122 + PGA1_c07300 0.39 -1.6
752,148 + PGA1_c07300 0.42 -0.8
752,156 - PGA1_c07300 0.42 -0.0
752,171 - PGA1_c07300 0.44 -1.1
752,190 + PGA1_c07300 0.46 -1.2
752,239 - PGA1_c07300 0.51 -0.6
752,277 + PGA1_c07300 0.55 -0.5
752,327 - PGA1_c07300 0.60 -0.2
752,390 - PGA1_c07300 0.67 -0.3
752,413 - PGA1_c07300 0.69 -0.2
752,425 + PGA1_c07300 0.71 +1.0
752,425 + PGA1_c07300 0.71 +0.3
752,425 + PGA1_c07300 0.71 -0.8
752,426 + PGA1_c07300 0.71 -0.2
752,434 - PGA1_c07300 0.72 -1.2
752,483 + PGA1_c07300 0.77 +0.6
752,483 + PGA1_c07300 0.77 -0.3
752,483 + PGA1_c07300 0.77 +0.6
752,483 + PGA1_c07300 0.77 -1.0
752,483 + PGA1_c07300 0.77 -0.4
752,483 + PGA1_c07300 0.77 -1.5
752,491 - PGA1_c07300 0.78 -0.7
752,491 - PGA1_c07300 0.78 -0.2
752,491 - PGA1_c07300 0.78 -1.6
752,513 - PGA1_c07300 0.80 +0.8
752,527 + PGA1_c07300 0.81 +0.4
752,532 + PGA1_c07300 0.82 +0.3
752,592 - PGA1_c07300 0.88 -1.1
752,628 + +1.0
752,633 + +0.8
752,665 - +1.1
752,689 + -1.2
752,697 - -0.3
752,697 - -0.9
752,710 + -1.5
752,761 + -1.0
752,776 - -0.1
752,776 - +0.4
752,812 - -0.6
752,832 + -0.4
752,832 + +1.0
752,832 + -0.2
752,861 + -0.3
752,862 + -0.4
752,877 - +0.9
752,877 - -0.9
752,916 + PGA1_c07310 0.13 -0.7
752,916 + PGA1_c07310 0.13 +0.4
752,918 + PGA1_c07310 0.14 +0.3
752,918 + PGA1_c07310 0.14 +0.6
752,924 - PGA1_c07310 0.14 -1.4
752,926 - PGA1_c07310 0.14 +0.0
752,926 - PGA1_c07310 0.14 +0.4
752,926 - PGA1_c07310 0.14 -0.7
752,926 - PGA1_c07310 0.14 -0.1
752,979 + PGA1_c07310 0.19 -0.2
753,004 - PGA1_c07310 0.21 +0.1
753,070 + PGA1_c07310 0.27 -0.7
753,075 + PGA1_c07310 0.28 +0.6
753,075 + PGA1_c07310 0.28 -0.4
753,075 + PGA1_c07310 0.28 -0.6
753,075 + PGA1_c07310 0.28 -0.1
753,075 + PGA1_c07310 0.28 +0.2
753,075 + PGA1_c07310 0.28 -0.7
753,080 + PGA1_c07310 0.28 +1.2
753,083 - PGA1_c07310 0.28 -0.7
753,083 - PGA1_c07310 0.28 +0.9
753,083 - PGA1_c07310 0.28 -1.4
753,083 - PGA1_c07310 0.28 -2.0
753,083 - PGA1_c07310 0.28 -0.2
753,083 - PGA1_c07310 0.28 -0.7
753,083 - PGA1_c07310 0.28 -1.7
753,083 - PGA1_c07310 0.28 -1.0
753,122 + PGA1_c07310 0.32 -2.8
753,137 - PGA1_c07310 0.33 +0.6
753,168 + PGA1_c07310 0.36 +1.8
753,168 + PGA1_c07310 0.36 +1.0
753,168 + PGA1_c07310 0.36 -1.7
753,176 - PGA1_c07310 0.37 +0.1
753,176 - PGA1_c07310 0.37 +0.3
753,189 + PGA1_c07310 0.38 -1.0
753,192 - PGA1_c07310 0.38 +1.5
753,210 - PGA1_c07310 0.40 +0.6
753,280 - PGA1_c07310 0.46 +0.6
753,288 + PGA1_c07310 0.47 -1.9
753,316 - PGA1_c07310 0.49 -0.7
753,331 + PGA1_c07310 0.50 +0.1
753,364 - PGA1_c07310 0.53 -0.2
753,404 + PGA1_c07310 0.57 -0.9
753,412 - PGA1_c07310 0.58 +0.4
753,433 + PGA1_c07310 0.59 -1.0
753,441 - PGA1_c07310 0.60 +0.8
753,441 - PGA1_c07310 0.60 +1.2
753,515 + PGA1_c07310 0.67 +1.4
753,515 + PGA1_c07310 0.67 +0.3
753,515 + PGA1_c07310 0.67 +0.0
753,532 + PGA1_c07310 0.68 +0.2
753,540 - PGA1_c07310 0.69 -0.4
753,540 - PGA1_c07310 0.69 -0.5
753,543 + PGA1_c07310 0.69 -0.4
753,551 - PGA1_c07310 0.70 -0.1
753,551 - PGA1_c07310 0.70 -0.3
753,551 - PGA1_c07310 0.70 +0.5
753,592 - PGA1_c07310 0.74 +0.1
753,596 + PGA1_c07310 0.74 -0.2
753,699 + PGA1_c07310 0.83 -0.2
753,699 + PGA1_c07310 0.83 -0.5

Or see this region's nucleotide sequence