Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_658 and HP15_659 overlap by 4 nucleotides HP15_659 and HP15_660 are separated by 1 nucleotides HP15_660 and HP15_661 are separated by 325 nucleotides
HP15_658: HP15_658 - secreted protein-putative xanthan lyase, at 679,216 to 681,789
_658
HP15_659: HP15_659 - hypothetical protein, at 681,786 to 682,568
_659
HP15_660: HP15_660 - hypothetical protein, at 682,570 to 682,953
_660
HP15_661: HP15_661 - hypothetical protein, at 683,279 to 684,058
_661
Position (kb) 682
683 Strain fitness (log2 ratio) -2
-1
0
1 at 681.574 kb on + strand at 681.605 kb on + strand at 681.646 kb on + strand at 681.646 kb on + strand at 681.705 kb on - strand at 681.736 kb on + strand at 681.771 kb on - strand at 681.771 kb on - strand at 681.962 kb on + strand, within HP15_659 at 681.977 kb on + strand, within HP15_659 at 682.165 kb on + strand, within HP15_659 at 682.175 kb on + strand, within HP15_659 at 682.324 kb on - strand, within HP15_659 at 682.325 kb on - strand, within HP15_659 at 682.338 kb on + strand, within HP15_659 at 682.359 kb on - strand, within HP15_659 at 682.417 kb on + strand, within HP15_659 at 682.514 kb on + strand at 682.554 kb on + strand at 682.573 kb on + strand at 682.573 kb on + strand at 682.581 kb on - strand at 682.581 kb on - strand at 682.639 kb on + strand, within HP15_660 at 682.640 kb on + strand, within HP15_660 at 682.644 kb on + strand, within HP15_660 at 682.831 kb on + strand, within HP15_660 at 682.834 kb on - strand, within HP15_660 at 682.875 kb on + strand, within HP15_660 at 682.910 kb on + strand, within HP15_660 at 683.149 kb on + strand at 683.155 kb on + strand at 683.228 kb on + strand at 683.285 kb on - strand at 683.285 kb on - strand at 683.321 kb on + strand at 683.345 kb on - strand at 683.371 kb on + strand, within HP15_661 at 683.438 kb on + strand, within HP15_661 at 683.456 kb on - strand, within HP15_661 at 683.647 kb on + strand, within HP15_661 at 683.728 kb on - strand, within HP15_661 at 683.769 kb on - strand, within HP15_661 at 683.840 kb on - strand, within HP15_661 at 683.845 kb on - strand, within HP15_661 at 683.903 kb on + strand, within HP15_661 at 683.908 kb on + strand, within HP15_661 at 683.911 kb on - strand, within HP15_661 at 683.950 kb on + strand, within HP15_661
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 681,574 + -1.3 681,605 + -1.8 681,646 + -0.8 681,646 + -0.5 681,705 - -2.0 681,736 + -1.3 681,771 - -1.6 681,771 - -1.1 681,962 + HP15_659 0.22 -2.7 681,977 + HP15_659 0.24 -0.0 682,165 + HP15_659 0.48 -0.7 682,175 + HP15_659 0.50 -0.6 682,324 - HP15_659 0.69 -0.1 682,325 - HP15_659 0.69 +1.2 682,338 + HP15_659 0.70 -1.2 682,359 - HP15_659 0.73 -1.0 682,417 + HP15_659 0.81 -0.1 682,514 + -0.6 682,554 + +0.1 682,573 + +0.1 682,573 + +0.7 682,581 - -0.8 682,581 - -1.2 682,639 + HP15_660 0.18 +0.5 682,640 + HP15_660 0.18 -1.0 682,644 + HP15_660 0.19 -1.5 682,831 + HP15_660 0.68 +0.2 682,834 - HP15_660 0.69 +0.5 682,875 + HP15_660 0.79 -0.4 682,910 + HP15_660 0.89 -1.8 683,149 + +0.7 683,155 + -0.8 683,228 + -0.5 683,285 - -0.2 683,285 - -0.8 683,321 + -0.8 683,345 - -1.2 683,371 + HP15_661 0.12 -1.1 683,438 + HP15_661 0.20 -1.5 683,456 - HP15_661 0.23 -2.3 683,647 + HP15_661 0.47 +0.5 683,728 - HP15_661 0.58 -0.5 683,769 - HP15_661 0.63 -1.1 683,840 - HP15_661 0.72 +0.5 683,845 - HP15_661 0.73 -0.5 683,903 + HP15_661 0.80 -0.5 683,908 + HP15_661 0.81 -0.4 683,911 - HP15_661 0.81 -1.3 683,950 + HP15_661 0.86 -0.7
Or see this region's nucleotide sequence