Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05450 and PGA1_c05460 are separated by 197 nucleotides PGA1_c05460 and PGA1_c05470 are separated by 84 nucleotides PGA1_c05470 and PGA1_c05480 are separated by 154 nucleotides
PGA1_c05450: PGA1_c05450 - Predicted membrane protein, at 556,596 to 557,828
_c05450
PGA1_c05460: PGA1_c05460 - transcriptional regulator, LysR family, at 558,026 to 559,000
_c05460
PGA1_c05470: PGA1_c05470 - hydroxyisourate hydrolase, at 559,085 to 559,456
_c05470
PGA1_c05480: PGA1_c05480 - OHCU decarboxylase domain-containing protein, at 559,611 to 561,026
_c05480
Position (kb) 558
559
560 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 557.078 kb on - strand, within PGA1_c05450 at 557.132 kb on + strand, within PGA1_c05450 at 557.255 kb on + strand, within PGA1_c05450 at 557.271 kb on - strand, within PGA1_c05450 at 557.285 kb on - strand, within PGA1_c05450 at 557.314 kb on + strand, within PGA1_c05450 at 557.340 kb on - strand, within PGA1_c05450 at 557.378 kb on - strand, within PGA1_c05450 at 557.396 kb on + strand, within PGA1_c05450 at 557.419 kb on - strand, within PGA1_c05450 at 557.457 kb on - strand, within PGA1_c05450 at 557.472 kb on - strand, within PGA1_c05450 at 557.485 kb on + strand, within PGA1_c05450 at 557.485 kb on + strand, within PGA1_c05450 at 557.485 kb on + strand, within PGA1_c05450 at 557.493 kb on - strand, within PGA1_c05450 at 557.493 kb on - strand, within PGA1_c05450 at 557.493 kb on - strand, within PGA1_c05450 at 557.493 kb on - strand, within PGA1_c05450 at 557.510 kb on + strand, within PGA1_c05450 at 557.515 kb on + strand, within PGA1_c05450 at 557.518 kb on - strand, within PGA1_c05450 at 557.518 kb on - strand, within PGA1_c05450 at 557.518 kb on - strand, within PGA1_c05450 at 557.523 kb on - strand, within PGA1_c05450 at 557.552 kb on - strand, within PGA1_c05450 at 557.558 kb on + strand, within PGA1_c05450 at 557.563 kb on - strand, within PGA1_c05450 at 557.597 kb on - strand, within PGA1_c05450 at 557.701 kb on + strand, within PGA1_c05450 at 557.811 kb on - strand at 557.862 kb on + strand at 557.877 kb on + strand at 557.917 kb on + strand at 557.982 kb on + strand at 557.988 kb on - strand at 558.023 kb on + strand at 558.024 kb on - strand at 558.044 kb on + strand at 558.051 kb on + strand at 558.059 kb on - strand at 558.071 kb on - strand at 558.101 kb on - strand at 558.123 kb on + strand at 558.257 kb on - strand, within PGA1_c05460 at 558.257 kb on - strand, within PGA1_c05460 at 558.273 kb on - strand, within PGA1_c05460 at 558.320 kb on + strand, within PGA1_c05460 at 558.320 kb on + strand, within PGA1_c05460 at 558.451 kb on - strand, within PGA1_c05460 at 558.520 kb on + strand, within PGA1_c05460 at 558.525 kb on - strand, within PGA1_c05460 at 558.587 kb on + strand, within PGA1_c05460 at 558.587 kb on + strand, within PGA1_c05460 at 558.595 kb on - strand, within PGA1_c05460 at 558.597 kb on + strand, within PGA1_c05460 at 558.597 kb on + strand, within PGA1_c05460 at 558.605 kb on - strand, within PGA1_c05460 at 558.605 kb on - strand, within PGA1_c05460 at 558.641 kb on + strand, within PGA1_c05460 at 558.641 kb on + strand, within PGA1_c05460 at 558.651 kb on + strand, within PGA1_c05460 at 558.654 kb on - strand, within PGA1_c05460 at 558.659 kb on - strand, within PGA1_c05460 at 558.659 kb on - strand, within PGA1_c05460 at 558.674 kb on - strand, within PGA1_c05460 at 558.731 kb on + strand, within PGA1_c05460 at 558.892 kb on + strand, within PGA1_c05460 at 558.900 kb on - strand, within PGA1_c05460 at 558.900 kb on - strand, within PGA1_c05460 at 558.952 kb on + strand at 558.974 kb on + strand at 559.003 kb on - strand at 559.392 kb on + strand, within PGA1_c05470 at 559.392 kb on + strand, within PGA1_c05470 at 559.412 kb on + strand, within PGA1_c05470 at 559.489 kb on - strand at 559.505 kb on + strand at 559.505 kb on + strand at 559.505 kb on + strand at 559.512 kb on + strand at 559.512 kb on + strand at 559.520 kb on - strand at 559.567 kb on - strand at 559.729 kb on + strand at 559.753 kb on + strand, within PGA1_c05480 at 559.775 kb on - strand, within PGA1_c05480 at 559.834 kb on - strand, within PGA1_c05480 at 559.874 kb on + strand, within PGA1_c05480 at 559.933 kb on + strand, within PGA1_c05480 at 559.933 kb on + strand, within PGA1_c05480
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 557,078 - PGA1_c05450 0.39 -2.8 557,132 + PGA1_c05450 0.43 +0.1 557,255 + PGA1_c05450 0.53 -1.3 557,271 - PGA1_c05450 0.55 -0.2 557,285 - PGA1_c05450 0.56 -2.0 557,314 + PGA1_c05450 0.58 +0.1 557,340 - PGA1_c05450 0.60 -1.4 557,378 - PGA1_c05450 0.63 +0.2 557,396 + PGA1_c05450 0.65 -1.3 557,419 - PGA1_c05450 0.67 -0.1 557,457 - PGA1_c05450 0.70 -0.9 557,472 - PGA1_c05450 0.71 -1.3 557,485 + PGA1_c05450 0.72 -1.9 557,485 + PGA1_c05450 0.72 -0.0 557,485 + PGA1_c05450 0.72 -2.3 557,493 - PGA1_c05450 0.73 -1.2 557,493 - PGA1_c05450 0.73 -3.3 557,493 - PGA1_c05450 0.73 -1.5 557,493 - PGA1_c05450 0.73 +0.1 557,510 + PGA1_c05450 0.74 +0.2 557,515 + PGA1_c05450 0.75 -0.7 557,518 - PGA1_c05450 0.75 -0.9 557,518 - PGA1_c05450 0.75 -0.9 557,518 - PGA1_c05450 0.75 -1.2 557,523 - PGA1_c05450 0.75 -0.7 557,552 - PGA1_c05450 0.78 -0.5 557,558 + PGA1_c05450 0.78 -2.3 557,563 - PGA1_c05450 0.78 +0.7 557,597 - PGA1_c05450 0.81 -0.6 557,701 + PGA1_c05450 0.90 +0.7 557,811 - -0.6 557,862 + +0.2 557,877 + +0.1 557,917 + +1.0 557,982 + +1.0 557,988 - -1.2 558,023 + +0.7 558,024 - +0.7 558,044 + -0.9 558,051 + -0.0 558,059 - -0.7 558,071 - -1.8 558,101 - -0.0 558,123 + -0.9 558,257 - PGA1_c05460 0.24 -0.7 558,257 - PGA1_c05460 0.24 -0.3 558,273 - PGA1_c05460 0.25 +1.7 558,320 + PGA1_c05460 0.30 -0.3 558,320 + PGA1_c05460 0.30 -1.9 558,451 - PGA1_c05460 0.44 -0.2 558,520 + PGA1_c05460 0.51 +0.7 558,525 - PGA1_c05460 0.51 -0.9 558,587 + PGA1_c05460 0.58 -0.9 558,587 + PGA1_c05460 0.58 -0.8 558,595 - PGA1_c05460 0.58 +0.5 558,597 + PGA1_c05460 0.59 -1.2 558,597 + PGA1_c05460 0.59 +0.0 558,605 - PGA1_c05460 0.59 -1.2 558,605 - PGA1_c05460 0.59 -1.0 558,641 + PGA1_c05460 0.63 -0.9 558,641 + PGA1_c05460 0.63 -0.4 558,651 + PGA1_c05460 0.64 -0.6 558,654 - PGA1_c05460 0.64 -0.7 558,659 - PGA1_c05460 0.65 -0.3 558,659 - PGA1_c05460 0.65 +1.7 558,674 - PGA1_c05460 0.66 +0.3 558,731 + PGA1_c05460 0.72 -0.6 558,892 + PGA1_c05460 0.89 -0.6 558,900 - PGA1_c05460 0.90 -0.7 558,900 - PGA1_c05460 0.90 -0.2 558,952 + -0.1 558,974 + +0.7 559,003 - -1.5 559,392 + PGA1_c05470 0.83 -0.1 559,392 + PGA1_c05470 0.83 -1.7 559,412 + PGA1_c05470 0.88 -1.9 559,489 - -0.9 559,505 + -0.9 559,505 + +0.9 559,505 + +2.2 559,512 + +0.1 559,512 + +1.7 559,520 - +0.6 559,567 - -0.0 559,729 + +0.2 559,753 + PGA1_c05480 0.10 -3.5 559,775 - PGA1_c05480 0.12 -1.5 559,834 - PGA1_c05480 0.16 +0.2 559,874 + PGA1_c05480 0.19 -0.9 559,933 + PGA1_c05480 0.23 +0.7 559,933 + PGA1_c05480 0.23 -2.8
Or see this region's nucleotide sequence