Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04690

Experiment: m.b. Phosphomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04680 and PGA1_c04690 are separated by 125 nucleotidesPGA1_c04690 and PGA1_c04700 are separated by 39 nucleotides PGA1_c04680: PGA1_c04680 - transcriptional regulator, LysR family, at 460,198 to 461,106 _c04680 PGA1_c04690: PGA1_c04690 - putative phytanoyl-CoA dioxygenase, at 461,232 to 462,029 _c04690 PGA1_c04700: PGA1_c04700 - hypothetical protein, at 462,069 to 463,013 _c04700 Position (kb) 461 462 463Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 460.254 kb on + strandat 460.254 kb on + strandat 460.264 kb on + strandat 460.272 kb on - strandat 460.274 kb on + strandat 460.274 kb on + strandat 460.282 kb on - strandat 460.282 kb on - strandat 460.282 kb on - strandat 460.293 kb on + strand, within PGA1_c04680at 460.293 kb on + strand, within PGA1_c04680at 460.293 kb on + strand, within PGA1_c04680at 460.313 kb on + strand, within PGA1_c04680at 460.316 kb on - strand, within PGA1_c04680at 460.336 kb on + strand, within PGA1_c04680at 460.350 kb on - strand, within PGA1_c04680at 460.386 kb on - strand, within PGA1_c04680at 460.391 kb on - strand, within PGA1_c04680at 460.392 kb on - strand, within PGA1_c04680at 460.428 kb on + strand, within PGA1_c04680at 460.428 kb on - strand, within PGA1_c04680at 460.454 kb on + strand, within PGA1_c04680at 460.474 kb on - strand, within PGA1_c04680at 460.474 kb on - strand, within PGA1_c04680at 460.475 kb on + strand, within PGA1_c04680at 460.475 kb on + strand, within PGA1_c04680at 460.483 kb on - strand, within PGA1_c04680at 460.493 kb on - strand, within PGA1_c04680at 460.564 kb on + strand, within PGA1_c04680at 460.572 kb on - strand, within PGA1_c04680at 460.596 kb on + strand, within PGA1_c04680at 460.599 kb on + strand, within PGA1_c04680at 460.656 kb on + strand, within PGA1_c04680at 460.664 kb on - strand, within PGA1_c04680at 460.745 kb on + strand, within PGA1_c04680at 460.752 kb on + strand, within PGA1_c04680at 460.765 kb on + strand, within PGA1_c04680at 460.773 kb on - strand, within PGA1_c04680at 460.825 kb on + strand, within PGA1_c04680at 460.857 kb on - strand, within PGA1_c04680at 460.874 kb on - strand, within PGA1_c04680at 460.899 kb on + strand, within PGA1_c04680at 460.907 kb on - strand, within PGA1_c04680at 460.922 kb on - strand, within PGA1_c04680at 460.971 kb on + strand, within PGA1_c04680at 460.974 kb on - strand, within PGA1_c04680at 460.976 kb on + strand, within PGA1_c04680at 460.984 kb on - strand, within PGA1_c04680at 460.984 kb on - strand, within PGA1_c04680at 460.994 kb on + strand, within PGA1_c04680at 460.999 kb on + strand, within PGA1_c04680at 461.002 kb on - strand, within PGA1_c04680at 461.002 kb on - strand, within PGA1_c04680at 461.004 kb on + strand, within PGA1_c04680at 461.004 kb on + strand, within PGA1_c04680at 461.039 kb on + strandat 461.039 kb on + strandat 461.047 kb on - strandat 461.048 kb on + strandat 461.048 kb on + strandat 461.056 kb on - strandat 461.056 kb on - strandat 461.058 kb on - strandat 461.066 kb on - strandat 461.071 kb on + strandat 461.091 kb on + strandat 461.151 kb on + strandat 461.152 kb on - strandat 461.164 kb on - strandat 461.236 kb on - strandat 461.289 kb on + strandat 461.289 kb on + strandat 461.289 kb on + strandat 461.297 kb on - strandat 461.348 kb on - strand, within PGA1_c04690at 461.366 kb on + strand, within PGA1_c04690at 461.435 kb on - strand, within PGA1_c04690at 461.437 kb on + strand, within PGA1_c04690at 461.443 kb on - strand, within PGA1_c04690at 461.466 kb on + strand, within PGA1_c04690at 461.478 kb on + strand, within PGA1_c04690at 461.493 kb on + strand, within PGA1_c04690at 461.501 kb on - strand, within PGA1_c04690at 461.543 kb on - strand, within PGA1_c04690at 461.557 kb on + strand, within PGA1_c04690at 461.557 kb on + strand, within PGA1_c04690at 461.615 kb on + strand, within PGA1_c04690at 461.643 kb on - strand, within PGA1_c04690at 461.676 kb on - strand, within PGA1_c04690at 461.687 kb on - strand, within PGA1_c04690at 461.710 kb on + strand, within PGA1_c04690at 461.718 kb on - strand, within PGA1_c04690at 461.722 kb on + strand, within PGA1_c04690at 461.748 kb on + strand, within PGA1_c04690at 461.748 kb on + strand, within PGA1_c04690at 461.748 kb on + strand, within PGA1_c04690at 461.753 kb on + strand, within PGA1_c04690at 461.756 kb on - strand, within PGA1_c04690at 461.756 kb on - strand, within PGA1_c04690at 461.756 kb on - strand, within PGA1_c04690at 461.847 kb on - strand, within PGA1_c04690at 461.900 kb on + strand, within PGA1_c04690at 461.911 kb on + strand, within PGA1_c04690at 461.926 kb on + strand, within PGA1_c04690at 461.926 kb on + strand, within PGA1_c04690at 461.934 kb on - strand, within PGA1_c04690at 461.944 kb on - strand, within PGA1_c04690at 461.944 kb on - strand, within PGA1_c04690at 461.983 kb on - strandat 461.985 kb on - strandat 462.032 kb on + strandat 462.059 kb on + strandat 462.067 kb on - strandat 462.085 kb on + strandat 462.085 kb on + strandat 462.093 kb on - strandat 462.139 kb on + strandat 462.164 kb on - strand, within PGA1_c04700at 462.197 kb on + strand, within PGA1_c04700at 462.197 kb on + strand, within PGA1_c04700at 462.213 kb on - strand, within PGA1_c04700at 462.237 kb on - strand, within PGA1_c04700at 462.252 kb on + strand, within PGA1_c04700at 462.260 kb on - strand, within PGA1_c04700at 462.260 kb on - strand, within PGA1_c04700at 462.261 kb on + strand, within PGA1_c04700at 462.267 kb on - strand, within PGA1_c04700at 462.269 kb on - strand, within PGA1_c04700at 462.272 kb on - strand, within PGA1_c04700at 462.272 kb on - strand, within PGA1_c04700at 462.274 kb on - strand, within PGA1_c04700at 462.274 kb on - strand, within PGA1_c04700at 462.275 kb on + strand, within PGA1_c04700at 462.305 kb on + strand, within PGA1_c04700at 462.481 kb on - strand, within PGA1_c04700at 462.543 kb on + strand, within PGA1_c04700at 462.551 kb on - strand, within PGA1_c04700at 462.561 kb on + strand, within PGA1_c04700at 462.603 kb on - strand, within PGA1_c04700at 462.605 kb on - strand, within PGA1_c04700at 462.651 kb on - strand, within PGA1_c04700at 462.651 kb on - strand, within PGA1_c04700at 462.651 kb on - strand, within PGA1_c04700at 462.653 kb on + strand, within PGA1_c04700at 462.763 kb on - strand, within PGA1_c04700at 462.789 kb on - strand, within PGA1_c04700at 462.789 kb on - strand, within PGA1_c04700at 462.812 kb on + strand, within PGA1_c04700at 462.815 kb on - strand, within PGA1_c04700at 462.824 kb on + strand, within PGA1_c04700at 462.824 kb on + strand, within PGA1_c04700at 462.830 kb on + strand, within PGA1_c04700at 462.832 kb on - strand, within PGA1_c04700at 462.843 kb on - strand, within PGA1_c04700at 462.847 kb on + strand, within PGA1_c04700at 462.855 kb on - strand, within PGA1_c04700at 462.872 kb on - strand, within PGA1_c04700at 462.920 kb on + strandat 462.941 kb on - strandat 462.969 kb on - strandat 463.000 kb on + strandat 463.027 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml
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460,254 + +0.4
460,254 + -0.2
460,264 + +0.4
460,272 - -0.0
460,274 + +1.3
460,274 + +0.4
460,282 - -0.9
460,282 - -0.8
460,282 - -0.5
460,293 + PGA1_c04680 0.10 -0.5
460,293 + PGA1_c04680 0.10 -0.6
460,293 + PGA1_c04680 0.10 +0.5
460,313 + PGA1_c04680 0.13 +2.3
460,316 - PGA1_c04680 0.13 +1.6
460,336 + PGA1_c04680 0.15 -1.6
460,350 - PGA1_c04680 0.17 +1.3
460,386 - PGA1_c04680 0.21 -0.4
460,391 - PGA1_c04680 0.21 -0.0
460,392 - PGA1_c04680 0.21 -0.0
460,428 + PGA1_c04680 0.25 +0.9
460,428 - PGA1_c04680 0.25 -2.6
460,454 + PGA1_c04680 0.28 +0.2
460,474 - PGA1_c04680 0.30 +0.4
460,474 - PGA1_c04680 0.30 +0.5
460,475 + PGA1_c04680 0.30 -1.0
460,475 + PGA1_c04680 0.30 +0.3
460,483 - PGA1_c04680 0.31 -1.7
460,493 - PGA1_c04680 0.32 +0.1
460,564 + PGA1_c04680 0.40 -0.2
460,572 - PGA1_c04680 0.41 -0.3
460,596 + PGA1_c04680 0.44 +0.8
460,599 + PGA1_c04680 0.44 +0.2
460,656 + PGA1_c04680 0.50 -0.3
460,664 - PGA1_c04680 0.51 -0.9
460,745 + PGA1_c04680 0.60 -0.1
460,752 + PGA1_c04680 0.61 -0.1
460,765 + PGA1_c04680 0.62 -0.7
460,773 - PGA1_c04680 0.63 +0.2
460,825 + PGA1_c04680 0.69 +1.6
460,857 - PGA1_c04680 0.72 -0.4
460,874 - PGA1_c04680 0.74 -0.5
460,899 + PGA1_c04680 0.77 -0.2
460,907 - PGA1_c04680 0.78 -2.5
460,922 - PGA1_c04680 0.80 +0.2
460,971 + PGA1_c04680 0.85 +0.4
460,974 - PGA1_c04680 0.85 +0.8
460,976 + PGA1_c04680 0.86 +0.5
460,984 - PGA1_c04680 0.86 +0.1
460,984 - PGA1_c04680 0.86 +0.0
460,994 + PGA1_c04680 0.88 +0.3
460,999 + PGA1_c04680 0.88 +0.9
461,002 - PGA1_c04680 0.88 +1.4
461,002 - PGA1_c04680 0.88 -0.4
461,004 + PGA1_c04680 0.89 -0.2
461,004 + PGA1_c04680 0.89 -0.3
461,039 + +1.3
461,039 + +0.3
461,047 - +1.0
461,048 + +2.5
461,048 + -1.2
461,056 - -0.4
461,056 - +0.2
461,058 - -0.1
461,066 - +0.2
461,071 + -1.4
461,091 + -0.2
461,151 + +1.0
461,152 - -0.2
461,164 - +0.3
461,236 - +0.8
461,289 + -0.7
461,289 + +1.4
461,289 + -0.2
461,297 - +1.3
461,348 - PGA1_c04690 0.15 -0.2
461,366 + PGA1_c04690 0.17 +0.2
461,435 - PGA1_c04690 0.25 -0.5
461,437 + PGA1_c04690 0.26 -0.6
461,443 - PGA1_c04690 0.26 -2.0
461,466 + PGA1_c04690 0.29 -1.2
461,478 + PGA1_c04690 0.31 +0.0
461,493 + PGA1_c04690 0.33 +0.3
461,501 - PGA1_c04690 0.34 +0.2
461,543 - PGA1_c04690 0.39 +0.8
461,557 + PGA1_c04690 0.41 -1.4
461,557 + PGA1_c04690 0.41 -1.2
461,615 + PGA1_c04690 0.48 +0.5
461,643 - PGA1_c04690 0.52 -0.6
461,676 - PGA1_c04690 0.56 +0.2
461,687 - PGA1_c04690 0.57 -1.8
461,710 + PGA1_c04690 0.60 -0.5
461,718 - PGA1_c04690 0.61 +0.9
461,722 + PGA1_c04690 0.61 +0.1
461,748 + PGA1_c04690 0.65 +0.6
461,748 + PGA1_c04690 0.65 -1.0
461,748 + PGA1_c04690 0.65 -1.5
461,753 + PGA1_c04690 0.65 +0.9
461,756 - PGA1_c04690 0.66 -0.1
461,756 - PGA1_c04690 0.66 -1.1
461,756 - PGA1_c04690 0.66 -0.0
461,847 - PGA1_c04690 0.77 +0.7
461,900 + PGA1_c04690 0.84 +0.2
461,911 + PGA1_c04690 0.85 +0.2
461,926 + PGA1_c04690 0.87 -1.4
461,926 + PGA1_c04690 0.87 -0.5
461,934 - PGA1_c04690 0.88 -0.4
461,944 - PGA1_c04690 0.89 +0.2
461,944 - PGA1_c04690 0.89 -0.2
461,983 - +1.2
461,985 - -0.4
462,032 + -0.1
462,059 + -2.0
462,067 - -0.3
462,085 + -3.2
462,085 + -1.6
462,093 - +0.0
462,139 + +0.6
462,164 - PGA1_c04700 0.10 -0.3
462,197 + PGA1_c04700 0.14 -0.4
462,197 + PGA1_c04700 0.14 -2.1
462,213 - PGA1_c04700 0.15 -0.8
462,237 - PGA1_c04700 0.18 -0.2
462,252 + PGA1_c04700 0.19 -0.7
462,260 - PGA1_c04700 0.20 +0.5
462,260 - PGA1_c04700 0.20 -1.5
462,261 + PGA1_c04700 0.20 -0.3
462,267 - PGA1_c04700 0.21 -0.9
462,269 - PGA1_c04700 0.21 -0.1
462,272 - PGA1_c04700 0.21 -0.0
462,272 - PGA1_c04700 0.21 +0.7
462,274 - PGA1_c04700 0.22 -0.1
462,274 - PGA1_c04700 0.22 -0.5
462,275 + PGA1_c04700 0.22 +0.4
462,305 + PGA1_c04700 0.25 -0.5
462,481 - PGA1_c04700 0.44 +0.2
462,543 + PGA1_c04700 0.50 -1.3
462,551 - PGA1_c04700 0.51 +0.9
462,561 + PGA1_c04700 0.52 +0.9
462,603 - PGA1_c04700 0.57 -1.5
462,605 - PGA1_c04700 0.57 -1.0
462,651 - PGA1_c04700 0.62 +0.2
462,651 - PGA1_c04700 0.62 -0.9
462,651 - PGA1_c04700 0.62 +0.0
462,653 + PGA1_c04700 0.62 +0.3
462,763 - PGA1_c04700 0.73 +0.3
462,789 - PGA1_c04700 0.76 -1.5
462,789 - PGA1_c04700 0.76 +0.3
462,812 + PGA1_c04700 0.79 -0.1
462,815 - PGA1_c04700 0.79 -0.3
462,824 + PGA1_c04700 0.80 -1.0
462,824 + PGA1_c04700 0.80 +0.2
462,830 + PGA1_c04700 0.81 +0.7
462,832 - PGA1_c04700 0.81 +0.3
462,843 - PGA1_c04700 0.82 +0.2
462,847 + PGA1_c04700 0.82 -0.2
462,855 - PGA1_c04700 0.83 +0.8
462,872 - PGA1_c04700 0.85 +0.3
462,920 + -0.9
462,941 - +0.0
462,969 - +0.9
463,000 + -0.9
463,027 + +1.3

Or see this region's nucleotide sequence