Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04250

Experiment: m.b. Phosphomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04230 and PGA1_c04240 are separated by 108 nucleotidesPGA1_c04240 and PGA1_c04250 overlap by 1 nucleotidesPGA1_c04250 and PGA1_c04260 are separated by 3 nucleotides PGA1_c04230: PGA1_c04230 - putative phosphonates metabolism transcriptional regulator phnF, at 410,593 to 411,327 _c04230 PGA1_c04240: PGA1_c04240 - protein PhnG, at 411,436 to 411,912 _c04240 PGA1_c04250: PGA1_c04250 - protein PhnH, at 411,912 to 412,508 _c04250 PGA1_c04260: PGA1_c04260 - protein PhnI, at 412,512 to 413,621 _c04260 Position (kb) 411 412 413Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 411.003 kb on + strand, within PGA1_c04230at 411.016 kb on + strand, within PGA1_c04230at 411.129 kb on + strand, within PGA1_c04230at 411.129 kb on + strand, within PGA1_c04230at 411.164 kb on - strand, within PGA1_c04230at 411.165 kb on - strand, within PGA1_c04230at 411.184 kb on - strand, within PGA1_c04230at 411.194 kb on + strand, within PGA1_c04230at 411.209 kb on - strand, within PGA1_c04230at 411.268 kb on - strandat 411.361 kb on + strandat 411.361 kb on + strandat 411.361 kb on + strandat 411.369 kb on - strandat 411.369 kb on - strandat 411.369 kb on - strandat 411.424 kb on + strandat 411.424 kb on + strandat 411.432 kb on - strandat 411.433 kb on - strandat 411.452 kb on + strandat 411.486 kb on + strand, within PGA1_c04240at 411.500 kb on - strand, within PGA1_c04240at 411.501 kb on - strand, within PGA1_c04240at 411.568 kb on + strand, within PGA1_c04240at 411.594 kb on + strand, within PGA1_c04240at 411.608 kb on + strand, within PGA1_c04240at 411.640 kb on + strand, within PGA1_c04240at 411.648 kb on - strand, within PGA1_c04240at 411.740 kb on - strand, within PGA1_c04240at 411.814 kb on + strand, within PGA1_c04240at 411.816 kb on - strand, within PGA1_c04240at 411.838 kb on + strand, within PGA1_c04240at 411.906 kb on + strandat 411.931 kb on - strandat 412.031 kb on + strand, within PGA1_c04250at 412.031 kb on + strand, within PGA1_c04250at 412.047 kb on - strand, within PGA1_c04250at 412.086 kb on - strand, within PGA1_c04250at 412.151 kb on - strand, within PGA1_c04250at 412.179 kb on + strand, within PGA1_c04250at 412.179 kb on + strand, within PGA1_c04250at 412.179 kb on - strand, within PGA1_c04250at 412.187 kb on - strand, within PGA1_c04250at 412.187 kb on - strand, within PGA1_c04250at 412.189 kb on + strand, within PGA1_c04250at 412.197 kb on - strand, within PGA1_c04250at 412.222 kb on + strand, within PGA1_c04250at 412.223 kb on - strand, within PGA1_c04250at 412.230 kb on - strand, within PGA1_c04250at 412.238 kb on + strand, within PGA1_c04250at 412.258 kb on + strand, within PGA1_c04250at 412.309 kb on - strand, within PGA1_c04250at 412.347 kb on - strand, within PGA1_c04250at 412.354 kb on - strand, within PGA1_c04250at 412.355 kb on - strand, within PGA1_c04250at 412.402 kb on - strand, within PGA1_c04250at 412.459 kb on - strandat 412.463 kb on + strandat 412.463 kb on + strandat 412.463 kb on + strandat 412.463 kb on + strandat 412.471 kb on - strandat 412.490 kb on + strandat 412.579 kb on + strandat 412.602 kb on + strandat 412.610 kb on - strandat 412.610 kb on - strandat 412.614 kb on + strandat 412.639 kb on - strand, within PGA1_c04260at 412.652 kb on + strand, within PGA1_c04260at 412.658 kb on + strand, within PGA1_c04260at 412.658 kb on + strand, within PGA1_c04260at 412.658 kb on + strand, within PGA1_c04260at 412.660 kb on - strand, within PGA1_c04260at 412.719 kb on + strand, within PGA1_c04260at 412.727 kb on - strand, within PGA1_c04260at 412.727 kb on - strand, within PGA1_c04260at 412.833 kb on + strand, within PGA1_c04260at 412.855 kb on + strand, within PGA1_c04260at 412.870 kb on - strand, within PGA1_c04260at 412.922 kb on - strand, within PGA1_c04260at 412.924 kb on + strand, within PGA1_c04260at 412.943 kb on + strand, within PGA1_c04260at 412.961 kb on - strand, within PGA1_c04260at 413.024 kb on + strand, within PGA1_c04260at 413.032 kb on - strand, within PGA1_c04260at 413.116 kb on - strand, within PGA1_c04260at 413.118 kb on + strand, within PGA1_c04260at 413.126 kb on - strand, within PGA1_c04260at 413.133 kb on - strand, within PGA1_c04260at 413.144 kb on - strand, within PGA1_c04260at 413.240 kb on - strand, within PGA1_c04260at 413.284 kb on + strand, within PGA1_c04260at 413.284 kb on + strand, within PGA1_c04260at 413.292 kb on - strand, within PGA1_c04260at 413.292 kb on - strand, within PGA1_c04260at 413.292 kb on - strand, within PGA1_c04260at 413.294 kb on + strand, within PGA1_c04260at 413.302 kb on - strand, within PGA1_c04260at 413.303 kb on + strand, within PGA1_c04260at 413.311 kb on - strand, within PGA1_c04260at 413.324 kb on + strand, within PGA1_c04260at 413.384 kb on - strand, within PGA1_c04260at 413.385 kb on - strand, within PGA1_c04260at 413.395 kb on - strand, within PGA1_c04260at 413.407 kb on + strand, within PGA1_c04260at 413.407 kb on + strand, within PGA1_c04260at 413.429 kb on + strand, within PGA1_c04260at 413.437 kb on + strand, within PGA1_c04260at 413.460 kb on + strand, within PGA1_c04260at 413.486 kb on + strand, within PGA1_c04260at 413.507 kb on + strand, within PGA1_c04260at 413.507 kb on + strand, within PGA1_c04260at 413.507 kb on + strand, within PGA1_c04260

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml
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411,003 + PGA1_c04230 0.56 +1.7
411,016 + PGA1_c04230 0.58 +0.4
411,129 + PGA1_c04230 0.73 +1.3
411,129 + PGA1_c04230 0.73 +0.4
411,164 - PGA1_c04230 0.78 +0.0
411,165 - PGA1_c04230 0.78 +0.6
411,184 - PGA1_c04230 0.80 +0.4
411,194 + PGA1_c04230 0.82 +0.8
411,209 - PGA1_c04230 0.84 -0.5
411,268 - +1.5
411,361 + -1.3
411,361 + -2.6
411,361 + -0.9
411,369 - -2.0
411,369 - -1.8
411,369 - -1.4
411,424 + +0.2
411,424 + -2.3
411,432 - -1.9
411,433 - -0.8
411,452 + -2.5
411,486 + PGA1_c04240 0.10 -1.5
411,500 - PGA1_c04240 0.13 -3.7
411,501 - PGA1_c04240 0.14 -2.0
411,568 + PGA1_c04240 0.28 -3.6
411,594 + PGA1_c04240 0.33 -2.9
411,608 + PGA1_c04240 0.36 -1.2
411,640 + PGA1_c04240 0.43 -2.6
411,648 - PGA1_c04240 0.44 -3.6
411,740 - PGA1_c04240 0.64 -2.8
411,814 + PGA1_c04240 0.79 -1.7
411,816 - PGA1_c04240 0.80 -0.9
411,838 + PGA1_c04240 0.84 -1.5
411,906 + +0.0
411,931 - -2.6
412,031 + PGA1_c04250 0.20 -3.6
412,031 + PGA1_c04250 0.20 -1.6
412,047 - PGA1_c04250 0.23 -3.9
412,086 - PGA1_c04250 0.29 -2.1
412,151 - PGA1_c04250 0.40 -2.1
412,179 + PGA1_c04250 0.45 -1.8
412,179 + PGA1_c04250 0.45 -2.6
412,179 - PGA1_c04250 0.45 -2.3
412,187 - PGA1_c04250 0.46 -0.3
412,187 - PGA1_c04250 0.46 -3.3
412,189 + PGA1_c04250 0.46 -1.0
412,197 - PGA1_c04250 0.48 -0.9
412,222 + PGA1_c04250 0.52 -0.7
412,223 - PGA1_c04250 0.52 -1.6
412,230 - PGA1_c04250 0.53 -2.0
412,238 + PGA1_c04250 0.55 -2.3
412,258 + PGA1_c04250 0.58 -2.3
412,309 - PGA1_c04250 0.66 -1.9
412,347 - PGA1_c04250 0.73 -2.3
412,354 - PGA1_c04250 0.74 +0.7
412,355 - PGA1_c04250 0.74 -3.9
412,402 - PGA1_c04250 0.82 -2.6
412,459 - -3.0
412,463 + +0.3
412,463 + -0.6
412,463 + -2.8
412,463 + -0.3
412,471 - -0.9
412,490 + -0.5
412,579 + -2.5
412,602 + -2.2
412,610 - -2.2
412,610 - -0.3
412,614 + -3.5
412,639 - PGA1_c04260 0.11 -1.9
412,652 + PGA1_c04260 0.13 -1.1
412,658 + PGA1_c04260 0.13 -2.5
412,658 + PGA1_c04260 0.13 -2.5
412,658 + PGA1_c04260 0.13 -0.9
412,660 - PGA1_c04260 0.13 -1.9
412,719 + PGA1_c04260 0.19 -2.0
412,727 - PGA1_c04260 0.19 -1.1
412,727 - PGA1_c04260 0.19 -2.2
412,833 + PGA1_c04260 0.29 -3.3
412,855 + PGA1_c04260 0.31 -4.5
412,870 - PGA1_c04260 0.32 -4.9
412,922 - PGA1_c04260 0.37 -1.8
412,924 + PGA1_c04260 0.37 -3.1
412,943 + PGA1_c04260 0.39 -0.9
412,961 - PGA1_c04260 0.40 -4.6
413,024 + PGA1_c04260 0.46 -4.5
413,032 - PGA1_c04260 0.47 -2.6
413,116 - PGA1_c04260 0.54 -4.1
413,118 + PGA1_c04260 0.55 -2.9
413,126 - PGA1_c04260 0.55 -1.1
413,133 - PGA1_c04260 0.56 -3.2
413,144 - PGA1_c04260 0.57 -1.9
413,240 - PGA1_c04260 0.66 -0.9
413,284 + PGA1_c04260 0.70 -3.5
413,284 + PGA1_c04260 0.70 -3.0
413,292 - PGA1_c04260 0.70 -3.2
413,292 - PGA1_c04260 0.70 -3.2
413,292 - PGA1_c04260 0.70 -2.5
413,294 + PGA1_c04260 0.70 -0.0
413,302 - PGA1_c04260 0.71 -0.9
413,303 + PGA1_c04260 0.71 -3.6
413,311 - PGA1_c04260 0.72 -4.0
413,324 + PGA1_c04260 0.73 -1.9
413,384 - PGA1_c04260 0.79 -1.9
413,385 - PGA1_c04260 0.79 -2.7
413,395 - PGA1_c04260 0.80 -1.5
413,407 + PGA1_c04260 0.81 -2.2
413,407 + PGA1_c04260 0.81 -1.9
413,429 + PGA1_c04260 0.83 -3.0
413,437 + PGA1_c04260 0.83 -1.6
413,460 + PGA1_c04260 0.85 -3.3
413,486 + PGA1_c04260 0.88 -2.8
413,507 + PGA1_c04260 0.90 -3.3
413,507 + PGA1_c04260 0.90 -2.3
413,507 + PGA1_c04260 0.90 -2.3

Or see this region's nucleotide sequence