Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3830 and HP15_3831 are separated by 246 nucleotides HP15_3831 and HP15_3832 are separated by 87 nucleotides HP15_3832 and HP15_3833 are separated by 25 nucleotides
HP15_3830: HP15_3830 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 4,056,823 to 4,058,133
_3830
HP15_3831: HP15_3831 - transcriptional regulator, TetR family protein, at 4,058,380 to 4,058,985
_3831
HP15_3832: HP15_3832 - hypothetical protein, at 4,059,073 to 4,059,657
_3832
HP15_3833: HP15_3833 - nitrous-oxide reductase transcriptional activator NosR, at 4,059,683 to 4,061,749
_3833
Position (kb)
4058
4059 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4057.516 kb on - strand, within HP15_3830 at 4057.524 kb on + strand, within HP15_3830 at 4057.578 kb on + strand, within HP15_3830 at 4057.634 kb on - strand, within HP15_3830 at 4057.701 kb on + strand, within HP15_3830 at 4057.709 kb on - strand, within HP15_3830 at 4057.709 kb on - strand, within HP15_3830 at 4057.771 kb on - strand, within HP15_3830 at 4057.811 kb on + strand, within HP15_3830 at 4057.818 kb on + strand, within HP15_3830 at 4057.831 kb on - strand, within HP15_3830 at 4058.079 kb on - strand at 4058.123 kb on + strand at 4058.137 kb on + strand at 4058.145 kb on - strand at 4058.145 kb on - strand at 4058.245 kb on + strand at 4058.245 kb on + strand at 4058.335 kb on + strand at 4058.343 kb on - strand at 4058.480 kb on + strand, within HP15_3831 at 4058.528 kb on + strand, within HP15_3831 at 4058.569 kb on + strand, within HP15_3831 at 4058.611 kb on - strand, within HP15_3831 at 4058.736 kb on - strand, within HP15_3831 at 4058.759 kb on + strand, within HP15_3831 at 4058.788 kb on + strand, within HP15_3831 at 4058.793 kb on + strand, within HP15_3831 at 4058.892 kb on + strand, within HP15_3831 at 4059.155 kb on - strand, within HP15_3832 at 4059.270 kb on - strand, within HP15_3832 at 4059.275 kb on + strand, within HP15_3832 at 4059.658 kb on + strand at 4059.886 kb on + strand at 4059.887 kb on - strand at 4059.894 kb on - strand, within HP15_3833 at 4059.894 kb on - strand, within HP15_3833
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 4,057,516 - HP15_3830 0.53 +0.9 4,057,524 + HP15_3830 0.53 +1.2 4,057,578 + HP15_3830 0.58 +0.0 4,057,634 - HP15_3830 0.62 +1.0 4,057,701 + HP15_3830 0.67 -0.1 4,057,709 - HP15_3830 0.68 +0.5 4,057,709 - HP15_3830 0.68 -0.1 4,057,771 - HP15_3830 0.72 -2.4 4,057,811 + HP15_3830 0.75 -1.4 4,057,818 + HP15_3830 0.76 -1.6 4,057,831 - HP15_3830 0.77 +0.4 4,058,079 - +1.8 4,058,123 + +0.3 4,058,137 + -0.1 4,058,145 - -0.1 4,058,145 - +1.6 4,058,245 + +0.1 4,058,245 + +0.1 4,058,335 + +0.2 4,058,343 - -0.2 4,058,480 + HP15_3831 0.17 -0.8 4,058,528 + HP15_3831 0.24 -3.8 4,058,569 + HP15_3831 0.31 -1.4 4,058,611 - HP15_3831 0.38 -0.4 4,058,736 - HP15_3831 0.59 -1.1 4,058,759 + HP15_3831 0.63 -2.7 4,058,788 + HP15_3831 0.67 -2.1 4,058,793 + HP15_3831 0.68 -2.8 4,058,892 + HP15_3831 0.84 -1.4 4,059,155 - HP15_3832 0.14 +0.4 4,059,270 - HP15_3832 0.34 +0.6 4,059,275 + HP15_3832 0.35 +0.1 4,059,658 + -0.4 4,059,886 + +0.1 4,059,887 - +0.6 4,059,894 - HP15_3833 0.10 +1.9 4,059,894 - HP15_3833 0.10 +0.2
Or see this region's nucleotide sequence