Strain Fitness in Marinobacter adhaerens HP15 around HP15_3625

Experiment: m.b. Paraquat dichloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3624 and HP15_3625 are separated by 210 nucleotidesHP15_3625 and HP15_3626 are separated by 25 nucleotides HP15_3624: HP15_3624 - transporter, BCCT family protein, at 3,819,234 to 3,820,451 _3624 HP15_3625: HP15_3625 - choline dehydrogenase, at 3,820,662 to 3,822,347 _3625 HP15_3626: HP15_3626 - betaine aldehyde dehydrogenase, at 3,822,373 to 3,823,842 _3626 Position (kb) 3820 3821 3822 3823Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3819.717 kb on + strand, within HP15_3624at 3819.747 kb on - strand, within HP15_3624at 3819.747 kb on - strand, within HP15_3624at 3819.809 kb on + strand, within HP15_3624at 3819.840 kb on + strand, within HP15_3624at 3819.901 kb on + strand, within HP15_3624at 3819.901 kb on + strand, within HP15_3624at 3819.907 kb on - strand, within HP15_3624at 3820.095 kb on + strand, within HP15_3624at 3820.139 kb on + strand, within HP15_3624at 3820.233 kb on + strand, within HP15_3624at 3820.233 kb on + strand, within HP15_3624at 3820.241 kb on - strand, within HP15_3624at 3820.288 kb on + strand, within HP15_3624at 3820.310 kb on + strand, within HP15_3624at 3820.312 kb on - strand, within HP15_3624at 3820.313 kb on - strand, within HP15_3624at 3820.318 kb on - strand, within HP15_3624at 3820.371 kb on - strandat 3820.422 kb on + strandat 3820.422 kb on + strandat 3820.487 kb on - strandat 3820.489 kb on + strandat 3820.495 kb on - strandat 3820.497 kb on - strandat 3820.501 kb on + strandat 3820.552 kb on - strandat 3820.657 kb on - strandat 3820.669 kb on + strandat 3820.672 kb on - strandat 3820.675 kb on + strandat 3820.717 kb on + strandat 3820.764 kb on + strandat 3820.798 kb on - strandat 3820.855 kb on - strand, within HP15_3625at 3820.878 kb on - strand, within HP15_3625at 3821.028 kb on + strand, within HP15_3625at 3821.077 kb on - strand, within HP15_3625at 3821.160 kb on - strand, within HP15_3625at 3821.237 kb on - strand, within HP15_3625at 3821.318 kb on - strand, within HP15_3625at 3821.318 kb on - strand, within HP15_3625at 3821.323 kb on + strand, within HP15_3625at 3821.390 kb on + strand, within HP15_3625at 3821.405 kb on + strand, within HP15_3625at 3821.509 kb on + strand, within HP15_3625at 3821.527 kb on + strand, within HP15_3625at 3821.552 kb on + strand, within HP15_3625at 3821.560 kb on - strand, within HP15_3625at 3821.690 kb on + strand, within HP15_3625at 3821.690 kb on + strand, within HP15_3625at 3821.698 kb on - strand, within HP15_3625at 3821.698 kb on - strand, within HP15_3625at 3821.698 kb on - strand, within HP15_3625at 3821.705 kb on - strand, within HP15_3625at 3821.742 kb on + strand, within HP15_3625at 3821.781 kb on + strand, within HP15_3625at 3821.787 kb on - strand, within HP15_3625at 3821.870 kb on - strand, within HP15_3625at 3821.877 kb on - strand, within HP15_3625at 3821.877 kb on - strand, within HP15_3625at 3821.920 kb on + strand, within HP15_3625at 3821.958 kb on + strand, within HP15_3625at 3821.966 kb on - strand, within HP15_3625at 3821.967 kb on - strand, within HP15_3625at 3822.054 kb on + strand, within HP15_3625at 3822.062 kb on - strand, within HP15_3625at 3822.087 kb on + strand, within HP15_3625at 3822.101 kb on + strand, within HP15_3625at 3822.123 kb on + strand, within HP15_3625at 3822.184 kb on + strandat 3822.189 kb on + strandat 3822.192 kb on - strandat 3822.251 kb on + strandat 3822.290 kb on + strandat 3822.426 kb on - strandat 3822.598 kb on + strand, within HP15_3626at 3822.814 kb on + strand, within HP15_3626at 3822.960 kb on - strand, within HP15_3626at 3822.960 kb on - strand, within HP15_3626at 3823.007 kb on + strand, within HP15_3626at 3823.007 kb on + strand, within HP15_3626at 3823.007 kb on + strand, within HP15_3626at 3823.060 kb on + strand, within HP15_3626at 3823.121 kb on - strand, within HP15_3626at 3823.237 kb on + strand, within HP15_3626at 3823.339 kb on + strand, within HP15_3626at 3823.339 kb on + strand, within HP15_3626at 3823.347 kb on - strand, within HP15_3626at 3823.347 kb on - strand, within HP15_3626

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml
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3,819,717 + HP15_3624 0.40 +3.1
3,819,747 - HP15_3624 0.42 +2.4
3,819,747 - HP15_3624 0.42 +2.4
3,819,809 + HP15_3624 0.47 +2.9
3,819,840 + HP15_3624 0.50 +2.5
3,819,901 + HP15_3624 0.55 +1.5
3,819,901 + HP15_3624 0.55 +2.8
3,819,907 - HP15_3624 0.55 +2.9
3,820,095 + HP15_3624 0.71 +1.8
3,820,139 + HP15_3624 0.74 +2.7
3,820,233 + HP15_3624 0.82 +3.0
3,820,233 + HP15_3624 0.82 +2.3
3,820,241 - HP15_3624 0.83 +1.8
3,820,288 + HP15_3624 0.87 +2.9
3,820,310 + HP15_3624 0.88 +3.9
3,820,312 - HP15_3624 0.89 +2.2
3,820,313 - HP15_3624 0.89 +2.5
3,820,318 - HP15_3624 0.89 +2.0
3,820,371 - +2.2
3,820,422 + +2.6
3,820,422 + +1.6
3,820,487 - +2.2
3,820,489 + +2.1
3,820,495 - +1.4
3,820,497 - +2.9
3,820,501 + +1.5
3,820,552 - -1.1
3,820,657 - -4.0
3,820,669 + +1.5
3,820,672 - -2.8
3,820,675 + +2.0
3,820,717 + +1.6
3,820,764 + +2.4
3,820,798 - -1.2
3,820,855 - HP15_3625 0.11 +0.8
3,820,878 - HP15_3625 0.13 -3.1
3,821,028 + HP15_3625 0.22 +1.6
3,821,077 - HP15_3625 0.25 -1.3
3,821,160 - HP15_3625 0.30 -1.1
3,821,237 - HP15_3625 0.34 +0.2
3,821,318 - HP15_3625 0.39 +0.3
3,821,318 - HP15_3625 0.39 +0.5
3,821,323 + HP15_3625 0.39 +2.5
3,821,390 + HP15_3625 0.43 +2.2
3,821,405 + HP15_3625 0.44 +1.8
3,821,509 + HP15_3625 0.50 +2.0
3,821,527 + HP15_3625 0.51 +1.5
3,821,552 + HP15_3625 0.53 +2.1
3,821,560 - HP15_3625 0.53 +2.1
3,821,690 + HP15_3625 0.61 +2.5
3,821,690 + HP15_3625 0.61 +2.9
3,821,698 - HP15_3625 0.61 +1.8
3,821,698 - HP15_3625 0.61 +0.6
3,821,698 - HP15_3625 0.61 +2.2
3,821,705 - HP15_3625 0.62 +1.5
3,821,742 + HP15_3625 0.64 +2.1
3,821,781 + HP15_3625 0.66 +2.0
3,821,787 - HP15_3625 0.67 +1.2
3,821,870 - HP15_3625 0.72 +1.7
3,821,877 - HP15_3625 0.72 +0.4
3,821,877 - HP15_3625 0.72 +1.1
3,821,920 + HP15_3625 0.75 +1.8
3,821,958 + HP15_3625 0.77 +2.5
3,821,966 - HP15_3625 0.77 +1.0
3,821,967 - HP15_3625 0.77 -0.1
3,822,054 + HP15_3625 0.83 +2.4
3,822,062 - HP15_3625 0.83 +0.6
3,822,087 + HP15_3625 0.85 +2.0
3,822,101 + HP15_3625 0.85 +3.9
3,822,123 + HP15_3625 0.87 +2.7
3,822,184 + +2.2
3,822,189 + +1.9
3,822,192 - -0.7
3,822,251 + +1.8
3,822,290 + +3.5
3,822,426 - -2.9
3,822,598 + HP15_3626 0.15 +3.1
3,822,814 + HP15_3626 0.30 +2.0
3,822,960 - HP15_3626 0.40 -0.5
3,822,960 - HP15_3626 0.40 -1.4
3,823,007 + HP15_3626 0.43 +1.8
3,823,007 + HP15_3626 0.43 +3.7
3,823,007 + HP15_3626 0.43 +0.5
3,823,060 + HP15_3626 0.47 +1.3
3,823,121 - HP15_3626 0.51 -0.1
3,823,237 + HP15_3626 0.59 +2.7
3,823,339 + HP15_3626 0.66 +2.0
3,823,339 + HP15_3626 0.66 +2.5
3,823,347 - HP15_3626 0.66 +0.5
3,823,347 - HP15_3626 0.66 -2.9

Or see this region's nucleotide sequence