Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3618 and HP15_3619 are separated by 190 nucleotides HP15_3619 and HP15_3620 are separated by 259 nucleotides
HP15_3618: HP15_3618 - periplasmic sugar-binding domain protein, at 3,814,027 to 3,815,181
_3618
HP15_3619: HP15_3619 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 3,815,372 to 3,816,958
_3619
HP15_3620: HP15_3620 - conserved hypothetical protein, at 3,817,218 to 3,817,973
_3620
HP15_3621: HP15_3621 - antioxidant, AhpC/Tsa family protein, at 3,817,954 to 3,818,430
_3621
Position (kb)
3815
3816
3817 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3814.412 kb on + strand, within HP15_3618 at 3814.494 kb on - strand, within HP15_3618 at 3814.504 kb on - strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.545 kb on - strand, within HP15_3618 at 3814.545 kb on - strand, within HP15_3618 at 3814.545 kb on - strand, within HP15_3618 at 3814.657 kb on - strand, within HP15_3618 at 3814.676 kb on - strand, within HP15_3618 at 3814.790 kb on + strand, within HP15_3618 at 3814.798 kb on - strand, within HP15_3618 at 3814.798 kb on - strand, within HP15_3618 at 3814.843 kb on - strand, within HP15_3618 at 3814.852 kb on + strand, within HP15_3618 at 3814.859 kb on - strand, within HP15_3618 at 3814.861 kb on + strand, within HP15_3618 at 3814.935 kb on - strand, within HP15_3618 at 3814.942 kb on + strand, within HP15_3618 at 3814.950 kb on - strand, within HP15_3618 at 3814.986 kb on + strand, within HP15_3618 at 3814.987 kb on + strand, within HP15_3618 at 3815.062 kb on + strand, within HP15_3618 at 3815.129 kb on + strand at 3815.174 kb on + strand at 3815.194 kb on + strand at 3815.262 kb on + strand at 3815.270 kb on - strand at 3815.403 kb on - strand at 3815.426 kb on + strand at 3815.588 kb on - strand, within HP15_3619 at 3815.588 kb on - strand, within HP15_3619 at 3815.595 kb on + strand, within HP15_3619 at 3815.615 kb on - strand, within HP15_3619 at 3815.645 kb on + strand, within HP15_3619 at 3815.650 kb on + strand, within HP15_3619 at 3815.678 kb on - strand, within HP15_3619 at 3815.682 kb on + strand, within HP15_3619 at 3815.682 kb on + strand, within HP15_3619 at 3815.738 kb on - strand, within HP15_3619 at 3815.765 kb on - strand, within HP15_3619 at 3815.782 kb on - strand, within HP15_3619 at 3815.812 kb on + strand, within HP15_3619 at 3815.812 kb on + strand, within HP15_3619 at 3815.812 kb on + strand, within HP15_3619 at 3815.820 kb on - strand, within HP15_3619 at 3815.820 kb on - strand, within HP15_3619 at 3815.820 kb on - strand, within HP15_3619 at 3815.839 kb on + strand, within HP15_3619 at 3815.851 kb on + strand, within HP15_3619 at 3815.864 kb on - strand, within HP15_3619 at 3815.895 kb on + strand, within HP15_3619 at 3815.903 kb on - strand, within HP15_3619 at 3815.903 kb on - strand, within HP15_3619 at 3815.937 kb on + strand, within HP15_3619 at 3816.001 kb on + strand, within HP15_3619 at 3816.001 kb on + strand, within HP15_3619 at 3816.009 kb on - strand, within HP15_3619 at 3816.176 kb on - strand, within HP15_3619 at 3816.257 kb on - strand, within HP15_3619 at 3816.267 kb on + strand, within HP15_3619 at 3816.267 kb on + strand, within HP15_3619 at 3816.275 kb on - strand, within HP15_3619 at 3816.292 kb on - strand, within HP15_3619 at 3816.316 kb on + strand, within HP15_3619 at 3816.316 kb on + strand, within HP15_3619 at 3816.412 kb on + strand, within HP15_3619 at 3816.415 kb on - strand, within HP15_3619 at 3816.477 kb on + strand, within HP15_3619 at 3816.553 kb on - strand, within HP15_3619 at 3816.575 kb on + strand, within HP15_3619 at 3816.688 kb on + strand, within HP15_3619 at 3816.855 kb on - strand at 3816.964 kb on + strand at 3817.161 kb on + strand at 3817.229 kb on - strand at 3817.327 kb on + strand, within HP15_3620 at 3817.439 kb on - strand, within HP15_3620 at 3817.456 kb on - strand, within HP15_3620 at 3817.482 kb on - strand, within HP15_3620 at 3817.526 kb on - strand, within HP15_3620 at 3817.666 kb on - strand, within HP15_3620 at 3817.666 kb on - strand, within HP15_3620 at 3817.686 kb on - strand, within HP15_3620 at 3817.691 kb on - strand, within HP15_3620 at 3817.699 kb on + strand, within HP15_3620 at 3817.709 kb on + strand, within HP15_3620 at 3817.717 kb on - strand, within HP15_3620 at 3817.717 kb on - strand, within HP15_3620 at 3817.717 kb on - strand, within HP15_3620 at 3817.743 kb on - strand, within HP15_3620 at 3817.746 kb on - strand, within HP15_3620 at 3817.944 kb on + strand at 3817.952 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 3,814,412 + HP15_3618 0.33 +0.5 3,814,494 - HP15_3618 0.40 -0.2 3,814,504 - HP15_3618 0.41 +1.6 3,814,537 + HP15_3618 0.44 +1.2 3,814,537 + HP15_3618 0.44 +0.4 3,814,537 + HP15_3618 0.44 +0.6 3,814,537 + HP15_3618 0.44 +0.1 3,814,545 - HP15_3618 0.45 +0.8 3,814,545 - HP15_3618 0.45 +0.5 3,814,545 - HP15_3618 0.45 +1.1 3,814,657 - HP15_3618 0.55 +0.3 3,814,676 - HP15_3618 0.56 +1.0 3,814,790 + HP15_3618 0.66 +1.8 3,814,798 - HP15_3618 0.67 +0.2 3,814,798 - HP15_3618 0.67 +0.4 3,814,843 - HP15_3618 0.71 +1.1 3,814,852 + HP15_3618 0.71 -0.5 3,814,859 - HP15_3618 0.72 +0.3 3,814,861 + HP15_3618 0.72 +0.6 3,814,935 - HP15_3618 0.79 +0.6 3,814,942 + HP15_3618 0.79 +2.1 3,814,950 - HP15_3618 0.80 -0.4 3,814,986 + HP15_3618 0.83 +0.4 3,814,987 + HP15_3618 0.83 -0.5 3,815,062 + HP15_3618 0.90 +0.2 3,815,129 + -0.5 3,815,174 + +0.3 3,815,194 + -1.0 3,815,262 + +0.7 3,815,270 - +0.3 3,815,403 - +0.2 3,815,426 + -0.0 3,815,588 - HP15_3619 0.14 -0.6 3,815,588 - HP15_3619 0.14 -0.0 3,815,595 + HP15_3619 0.14 -0.2 3,815,615 - HP15_3619 0.15 +0.8 3,815,645 + HP15_3619 0.17 -1.2 3,815,650 + HP15_3619 0.18 -1.3 3,815,678 - HP15_3619 0.19 -1.2 3,815,682 + HP15_3619 0.20 -0.9 3,815,682 + HP15_3619 0.20 -0.4 3,815,738 - HP15_3619 0.23 -0.2 3,815,765 - HP15_3619 0.25 -1.9 3,815,782 - HP15_3619 0.26 -0.9 3,815,812 + HP15_3619 0.28 -0.7 3,815,812 + HP15_3619 0.28 -1.1 3,815,812 + HP15_3619 0.28 -1.3 3,815,820 - HP15_3619 0.28 -0.2 3,815,820 - HP15_3619 0.28 -0.9 3,815,820 - HP15_3619 0.28 -0.9 3,815,839 + HP15_3619 0.29 -1.0 3,815,851 + HP15_3619 0.30 -0.5 3,815,864 - HP15_3619 0.31 -1.2 3,815,895 + HP15_3619 0.33 -0.5 3,815,903 - HP15_3619 0.33 +0.1 3,815,903 - HP15_3619 0.33 -0.8 3,815,937 + HP15_3619 0.36 -0.8 3,816,001 + HP15_3619 0.40 -1.7 3,816,001 + HP15_3619 0.40 -0.1 3,816,009 - HP15_3619 0.40 -1.1 3,816,176 - HP15_3619 0.51 -1.5 3,816,257 - HP15_3619 0.56 +0.4 3,816,267 + HP15_3619 0.56 +1.3 3,816,267 + HP15_3619 0.56 -0.9 3,816,275 - HP15_3619 0.57 -0.8 3,816,292 - HP15_3619 0.58 -1.6 3,816,316 + HP15_3619 0.59 -0.4 3,816,316 + HP15_3619 0.59 -1.2 3,816,412 + HP15_3619 0.66 -0.5 3,816,415 - HP15_3619 0.66 -1.2 3,816,477 + HP15_3619 0.70 -1.4 3,816,553 - HP15_3619 0.74 -0.1 3,816,575 + HP15_3619 0.76 -0.2 3,816,688 + HP15_3619 0.83 -0.4 3,816,855 - +0.1 3,816,964 + -0.9 3,817,161 + +2.3 3,817,229 - +1.2 3,817,327 + HP15_3620 0.14 +0.2 3,817,439 - HP15_3620 0.29 +0.4 3,817,456 - HP15_3620 0.31 -3.2 3,817,482 - HP15_3620 0.35 +0.4 3,817,526 - HP15_3620 0.41 +0.9 3,817,666 - HP15_3620 0.59 +0.5 3,817,666 - HP15_3620 0.59 +0.3 3,817,686 - HP15_3620 0.62 -0.1 3,817,691 - HP15_3620 0.63 +1.4 3,817,699 + HP15_3620 0.64 +0.6 3,817,709 + HP15_3620 0.65 -0.6 3,817,717 - HP15_3620 0.66 -0.9 3,817,717 - HP15_3620 0.66 +0.5 3,817,717 - HP15_3620 0.66 +0.3 3,817,743 - HP15_3620 0.69 +0.6 3,817,746 - HP15_3620 0.70 +1.0 3,817,944 + +0.0 3,817,952 - +0.1
Or see this region's nucleotide sequence