Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35280 and PGA1_c35290 overlap by 4 nucleotides PGA1_c35290 and PGA1_c35300 are separated by 92 nucleotides PGA1_c35300 and PGA1_c35310 are separated by 62 nucleotides PGA1_c35310 and PGA1_c35320 overlap by 4 nucleotides
PGA1_c35280: PGA1_c35280 - conserved hypothetical protein, at 3,698,522 to 3,698,887
_c35280
PGA1_c35290: PGA1_c35290 - Conserved hypothetical protein (Lin0512_fam)., at 3,698,884 to 3,699,231
_c35290
PGA1_c35300: PGA1_c35300 - thioredoxin TrxA, at 3,699,324 to 3,699,644
_c35300
PGA1_c35310: PGA1_c35310 - double strand break repair helicase AddA, at 3,699,707 to 3,703,075
_c35310
PGA1_c35320: PGA1_c35320 - double strand break repair protein AddB, at 3,703,072 to 3,706,005
_c35320
Position (kb)
3699
3700
3701
3702
3703
3704 Strain fitness (log2 ratio)
-2
-1
0
1 at 3698.748 kb on + strand, within PGA1_c35280 at 3698.754 kb on - strand, within PGA1_c35280 at 3698.754 kb on - strand, within PGA1_c35280 at 3698.754 kb on - strand, within PGA1_c35280 at 3698.795 kb on + strand, within PGA1_c35280 at 3698.803 kb on + strand, within PGA1_c35280 at 3698.803 kb on - strand, within PGA1_c35280 at 3698.817 kb on + strand, within PGA1_c35280 at 3698.817 kb on + strand, within PGA1_c35280 at 3698.817 kb on + strand, within PGA1_c35280 at 3698.822 kb on + strand, within PGA1_c35280 at 3698.823 kb on + strand, within PGA1_c35280 at 3698.823 kb on + strand, within PGA1_c35280 at 3698.823 kb on + strand, within PGA1_c35280 at 3698.826 kb on - strand, within PGA1_c35280 at 3698.830 kb on - strand, within PGA1_c35280 at 3698.831 kb on - strand, within PGA1_c35280 at 3698.831 kb on - strand, within PGA1_c35280 at 3698.937 kb on - strand, within PGA1_c35290 at 3698.938 kb on + strand, within PGA1_c35290 at 3698.974 kb on + strand, within PGA1_c35290 at 3698.975 kb on + strand, within PGA1_c35290 at 3698.975 kb on + strand, within PGA1_c35290 at 3698.975 kb on + strand, within PGA1_c35290 at 3698.983 kb on - strand, within PGA1_c35290 at 3698.983 kb on - strand, within PGA1_c35290 at 3699.007 kb on - strand, within PGA1_c35290 at 3699.015 kb on - strand, within PGA1_c35290 at 3699.020 kb on - strand, within PGA1_c35290 at 3699.049 kb on - strand, within PGA1_c35290 at 3699.073 kb on + strand, within PGA1_c35290 at 3699.081 kb on - strand, within PGA1_c35290 at 3699.127 kb on + strand, within PGA1_c35290 at 3699.175 kb on - strand, within PGA1_c35290 at 3699.175 kb on - strand, within PGA1_c35290 at 3699.197 kb on + strand at 3699.227 kb on + strand at 3699.248 kb on - strand at 3699.724 kb on + strand at 3699.747 kb on - strand at 3699.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 3,698,748 + PGA1_c35280 0.62 +1.4 3,698,754 - PGA1_c35280 0.63 +1.3 3,698,754 - PGA1_c35280 0.63 -0.7 3,698,754 - PGA1_c35280 0.63 +0.8 3,698,795 + PGA1_c35280 0.75 -2.4 3,698,803 + PGA1_c35280 0.77 -1.6 3,698,803 - PGA1_c35280 0.77 -0.8 3,698,817 + PGA1_c35280 0.81 +1.2 3,698,817 + PGA1_c35280 0.81 +0.4 3,698,817 + PGA1_c35280 0.81 +0.2 3,698,822 + PGA1_c35280 0.82 -0.4 3,698,823 + PGA1_c35280 0.82 -0.7 3,698,823 + PGA1_c35280 0.82 +0.7 3,698,823 + PGA1_c35280 0.82 +0.3 3,698,826 - PGA1_c35280 0.83 -0.0 3,698,830 - PGA1_c35280 0.84 -0.4 3,698,831 - PGA1_c35280 0.84 -0.6 3,698,831 - PGA1_c35280 0.84 +0.9 3,698,937 - PGA1_c35290 0.15 -0.5 3,698,938 + PGA1_c35290 0.16 +0.1 3,698,974 + PGA1_c35290 0.26 -0.4 3,698,975 + PGA1_c35290 0.26 -0.3 3,698,975 + PGA1_c35290 0.26 -0.0 3,698,975 + PGA1_c35290 0.26 -0.5 3,698,983 - PGA1_c35290 0.28 -0.4 3,698,983 - PGA1_c35290 0.28 -1.0 3,699,007 - PGA1_c35290 0.35 -0.0 3,699,015 - PGA1_c35290 0.38 +1.0 3,699,020 - PGA1_c35290 0.39 -1.1 3,699,049 - PGA1_c35290 0.47 -0.9 3,699,073 + PGA1_c35290 0.54 -0.3 3,699,081 - PGA1_c35290 0.57 -2.1 3,699,127 + PGA1_c35290 0.70 +0.9 3,699,175 - PGA1_c35290 0.84 -1.5 3,699,175 - PGA1_c35290 0.84 +0.6 3,699,197 + -0.8 3,699,227 + -1.4 3,699,248 - -0.5 3,699,724 + -1.4 3,699,747 - +0.3 3,699,751 - -0.2
Or see this region's nucleotide sequence