Strain Fitness in Marinobacter adhaerens HP15 around HP15_3017

Experiment: m.b. Paraquat dichloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_tRNA48 and HP15_3017 are separated by 809 nucleotidesHP15_3017 and HP15_3018 are separated by 102 nucleotidesHP15_3018 and HP15_3019 are separated by 249 nucleotides HP15_tRNA48: HP15_tRNA48 - tRNA-Phe, at 3,161,615 to 3,161,690 _tRNA48 HP15_3017: HP15_3017 - molybdenum-pterin-binding protein, at 3,162,500 to 3,162,928 _3017 HP15_3018: HP15_3018 - protein containing UspA domain, at 3,163,031 to 3,163,402 _3018 HP15_3019: HP15_3019 - Na+/Ca+ antiporter, CaCA family, at 3,163,652 to 3,164,623 _3019 Position (kb) 3162 3163Strain fitness (log2 ratio) -1 0 1 2at 3161.511 kb on - strandat 3161.753 kb on - strandat 3161.797 kb on - strandat 3161.899 kb on + strandat 3161.982 kb on + strandat 3162.086 kb on - strandat 3162.236 kb on - strandat 3162.236 kb on - strandat 3162.247 kb on + strandat 3162.416 kb on - strandat 3162.565 kb on + strand, within HP15_3017at 3162.586 kb on + strand, within HP15_3017at 3162.594 kb on - strand, within HP15_3017at 3162.635 kb on - strand, within HP15_3017at 3162.673 kb on + strand, within HP15_3017at 3162.673 kb on + strand, within HP15_3017at 3162.673 kb on + strand, within HP15_3017at 3162.673 kb on + strand, within HP15_3017at 3162.681 kb on - strand, within HP15_3017at 3162.759 kb on - strand, within HP15_3017at 3162.903 kb on + strandat 3163.055 kb on - strandat 3163.423 kb on + strandat 3163.506 kb on + strandat 3163.587 kb on - strandat 3163.713 kb on - strandat 3163.805 kb on - strand, within HP15_3019at 3163.835 kb on - strand, within HP15_3019at 3163.865 kb on + strand, within HP15_3019at 3163.878 kb on - strand, within HP15_3019

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml
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3,161,511 - +2.1
3,161,753 - -0.5
3,161,797 - -0.1
3,161,899 + +0.7
3,161,982 + -0.1
3,162,086 - -0.6
3,162,236 - +0.3
3,162,236 - -0.2
3,162,247 + +0.5
3,162,416 - +0.5
3,162,565 + HP15_3017 0.15 +0.1
3,162,586 + HP15_3017 0.20 -0.1
3,162,594 - HP15_3017 0.22 -0.0
3,162,635 - HP15_3017 0.31 +0.7
3,162,673 + HP15_3017 0.40 +0.4
3,162,673 + HP15_3017 0.40 +0.6
3,162,673 + HP15_3017 0.40 +1.4
3,162,673 + HP15_3017 0.40 +0.3
3,162,681 - HP15_3017 0.42 +0.4
3,162,759 - HP15_3017 0.60 +1.6
3,162,903 + +0.8
3,163,055 - +0.7
3,163,423 + +1.0
3,163,506 + -0.9
3,163,587 - +0.1
3,163,713 - -0.4
3,163,805 - HP15_3019 0.16 +0.6
3,163,835 - HP15_3019 0.19 -1.0
3,163,865 + HP15_3019 0.22 +0.3
3,163,878 - HP15_3019 0.23 +0.2

Or see this region's nucleotide sequence