Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2701

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2700 and Psest_2701 are separated by 186 nucleotidesPsest_2701 and Psest_2702 overlap by 11 nucleotides Psest_2700: Psest_2700 - AraC-type DNA-binding domain-containing proteins, at 2,889,618 to 2,890,571 _2700 Psest_2701: Psest_2701 - Response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 2,890,758 to 2,891,900 _2701 Psest_2702: Psest_2702 - PAS domain S-box, at 2,891,890 to 2,894,775 _2702 Position (kb) 2890 2891 2892Strain fitness (log2 ratio) -3 -2 -1 0 1at 2889.796 kb on + strand, within Psest_2700at 2889.796 kb on + strand, within Psest_2700at 2889.796 kb on + strand, within Psest_2700at 2889.796 kb on + strand, within Psest_2700at 2889.796 kb on + strand, within Psest_2700at 2889.796 kb on + strand, within Psest_2700at 2889.797 kb on - strand, within Psest_2700at 2889.797 kb on - strand, within Psest_2700at 2889.797 kb on - strand, within Psest_2700at 2889.797 kb on - strand, within Psest_2700at 2889.797 kb on - strand, within Psest_2700at 2889.797 kb on - strand, within Psest_2700at 2889.839 kb on - strand, within Psest_2700at 2889.839 kb on - strand, within Psest_2700at 2889.839 kb on - strand, within Psest_2700at 2889.916 kb on + strand, within Psest_2700at 2889.916 kb on + strand, within Psest_2700at 2889.917 kb on - strand, within Psest_2700at 2889.917 kb on - strand, within Psest_2700at 2889.917 kb on - strand, within Psest_2700at 2890.018 kb on + strand, within Psest_2700at 2890.019 kb on - strand, within Psest_2700at 2890.019 kb on - strand, within Psest_2700at 2890.231 kb on + strand, within Psest_2700at 2890.231 kb on + strand, within Psest_2700at 2890.232 kb on - strand, within Psest_2700at 2890.232 kb on - strand, within Psest_2700at 2890.288 kb on + strand, within Psest_2700at 2890.393 kb on + strand, within Psest_2700at 2890.393 kb on + strand, within Psest_2700at 2890.393 kb on + strand, within Psest_2700at 2890.504 kb on + strandat 2890.504 kb on + strandat 2890.504 kb on + strandat 2890.505 kb on - strandat 2890.669 kb on + strandat 2890.670 kb on - strandat 2890.672 kb on - strandat 2890.672 kb on - strandat 2890.672 kb on - strandat 2890.672 kb on - strandat 2890.687 kb on + strandat 2890.688 kb on - strandat 2890.688 kb on - strandat 2890.688 kb on - strandat 2890.688 kb on - strandat 2890.712 kb on + strandat 2890.712 kb on + strandat 2890.712 kb on + strandat 2890.712 kb on + strandat 2890.712 kb on + strandat 2890.712 kb on + strandat 2890.712 kb on + strandat 2890.712 kb on + strandat 2890.712 kb on + strandat 2890.713 kb on - strandat 2890.713 kb on - strandat 2890.713 kb on - strandat 2890.713 kb on - strandat 2890.713 kb on - strandat 2890.713 kb on - strandat 2890.742 kb on + strandat 2890.786 kb on - strandat 2890.810 kb on + strandat 2890.927 kb on + strand, within Psest_2701at 2890.927 kb on + strand, within Psest_2701at 2890.927 kb on + strand, within Psest_2701at 2890.928 kb on - strand, within Psest_2701at 2890.949 kb on + strand, within Psest_2701at 2890.949 kb on + strand, within Psest_2701at 2890.949 kb on + strand, within Psest_2701at 2890.950 kb on - strand, within Psest_2701at 2890.951 kb on + strand, within Psest_2701at 2890.951 kb on + strand, within Psest_2701at 2890.951 kb on + strand, within Psest_2701at 2890.951 kb on + strand, within Psest_2701at 2890.951 kb on + strand, within Psest_2701at 2890.951 kb on + strand, within Psest_2701at 2890.951 kb on + strand, within Psest_2701at 2890.952 kb on - strand, within Psest_2701at 2890.952 kb on - strand, within Psest_2701at 2890.952 kb on - strand, within Psest_2701at 2890.952 kb on - strand, within Psest_2701at 2890.952 kb on - strand, within Psest_2701at 2890.952 kb on - strand, within Psest_2701at 2890.952 kb on - strand, within Psest_2701at 2890.987 kb on + strand, within Psest_2701at 2890.987 kb on + strand, within Psest_2701at 2890.987 kb on + strand, within Psest_2701at 2890.987 kb on + strand, within Psest_2701at 2890.988 kb on - strand, within Psest_2701at 2890.988 kb on - strand, within Psest_2701at 2890.988 kb on - strand, within Psest_2701at 2890.988 kb on - strand, within Psest_2701at 2890.988 kb on - strand, within Psest_2701at 2891.066 kb on + strand, within Psest_2701at 2891.066 kb on + strand, within Psest_2701at 2891.066 kb on + strand, within Psest_2701at 2891.067 kb on - strand, within Psest_2701at 2891.067 kb on - strand, within Psest_2701at 2891.110 kb on + strand, within Psest_2701at 2891.110 kb on + strand, within Psest_2701at 2891.110 kb on + strand, within Psest_2701at 2891.110 kb on + strand, within Psest_2701at 2891.111 kb on - strand, within Psest_2701at 2891.111 kb on - strand, within Psest_2701at 2891.111 kb on - strand, within Psest_2701at 2891.111 kb on - strand, within Psest_2701at 2891.111 kb on - strand, within Psest_2701at 2891.295 kb on + strand, within Psest_2701at 2891.295 kb on + strand, within Psest_2701at 2891.361 kb on - strand, within Psest_2701at 2891.395 kb on + strand, within Psest_2701at 2891.395 kb on + strand, within Psest_2701at 2891.395 kb on + strand, within Psest_2701at 2891.395 kb on + strand, within Psest_2701at 2891.396 kb on - strand, within Psest_2701at 2891.396 kb on - strand, within Psest_2701at 2891.396 kb on - strand, within Psest_2701at 2891.456 kb on + strand, within Psest_2701at 2891.457 kb on - strand, within Psest_2701at 2891.869 kb on - strandat 2891.869 kb on - strandat 2891.971 kb on + strandat 2892.148 kb on + strandat 2892.251 kb on + strand, within Psest_2702at 2892.252 kb on - strand, within Psest_2702at 2892.252 kb on - strand, within Psest_2702at 2892.529 kb on - strand, within Psest_2702at 2892.530 kb on + strand, within Psest_2702at 2892.531 kb on - strand, within Psest_2702at 2892.548 kb on + strand, within Psest_2702at 2892.549 kb on - strand, within Psest_2702at 2892.549 kb on - strand, within Psest_2702at 2892.581 kb on + strand, within Psest_2702at 2892.581 kb on + strand, within Psest_2702at 2892.582 kb on - strand, within Psest_2702at 2892.582 kb on - strand, within Psest_2702at 2892.599 kb on - strand, within Psest_2702at 2892.763 kb on + strand, within Psest_2702at 2892.764 kb on - strand, within Psest_2702

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
2,889,796 + Psest_2700 0.19 +0.2
2,889,796 + Psest_2700 0.19 -0.6
2,889,796 + Psest_2700 0.19 -0.6
2,889,796 + Psest_2700 0.19 +0.0
2,889,796 + Psest_2700 0.19 -0.1
2,889,796 + Psest_2700 0.19 -0.2
2,889,797 - Psest_2700 0.19 -1.5
2,889,797 - Psest_2700 0.19 -0.2
2,889,797 - Psest_2700 0.19 +0.1
2,889,797 - Psest_2700 0.19 -1.8
2,889,797 - Psest_2700 0.19 -0.9
2,889,797 - Psest_2700 0.19 +0.2
2,889,839 - Psest_2700 0.23 +0.2
2,889,839 - Psest_2700 0.23 -0.3
2,889,839 - Psest_2700 0.23 -2.7
2,889,916 + Psest_2700 0.31 -1.0
2,889,916 + Psest_2700 0.31 +1.1
2,889,917 - Psest_2700 0.31 -1.9
2,889,917 - Psest_2700 0.31 +0.0
2,889,917 - Psest_2700 0.31 +0.2
2,890,018 + Psest_2700 0.42 +0.8
2,890,019 - Psest_2700 0.42 +0.3
2,890,019 - Psest_2700 0.42 +1.5
2,890,231 + Psest_2700 0.64 -0.4
2,890,231 + Psest_2700 0.64 +0.7
2,890,232 - Psest_2700 0.64 +0.3
2,890,232 - Psest_2700 0.64 +1.0
2,890,288 + Psest_2700 0.70 -0.9
2,890,393 + Psest_2700 0.81 +0.2
2,890,393 + Psest_2700 0.81 -0.2
2,890,393 + Psest_2700 0.81 +0.3
2,890,504 + -0.2
2,890,504 + +0.8
2,890,504 + +0.4
2,890,505 - -1.6
2,890,669 + +0.5
2,890,670 - +0.0
2,890,672 - +0.8
2,890,672 - +0.3
2,890,672 - +0.6
2,890,672 - -0.2
2,890,687 + +0.6
2,890,688 - +0.3
2,890,688 - +0.8
2,890,688 - -0.2
2,890,688 - +0.3
2,890,712 + +0.0
2,890,712 + -0.3
2,890,712 + +0.2
2,890,712 + +0.5
2,890,712 + +0.1
2,890,712 + -0.3
2,890,712 + +0.8
2,890,712 + +0.2
2,890,712 + -0.2
2,890,713 - -0.2
2,890,713 - +0.2
2,890,713 - +0.3
2,890,713 - -0.2
2,890,713 - +0.0
2,890,713 - +0.2
2,890,742 + -0.1
2,890,786 - +0.6
2,890,810 + +1.3
2,890,927 + Psest_2701 0.15 -0.2
2,890,927 + Psest_2701 0.15 -0.2
2,890,927 + Psest_2701 0.15 +0.3
2,890,928 - Psest_2701 0.15 +0.3
2,890,949 + Psest_2701 0.17 -0.1
2,890,949 + Psest_2701 0.17 +0.3
2,890,949 + Psest_2701 0.17 +0.0
2,890,950 - Psest_2701 0.17 -1.1
2,890,951 + Psest_2701 0.17 -0.1
2,890,951 + Psest_2701 0.17 +0.6
2,890,951 + Psest_2701 0.17 +0.5
2,890,951 + Psest_2701 0.17 +1.0
2,890,951 + Psest_2701 0.17 +0.1
2,890,951 + Psest_2701 0.17 -0.2
2,890,951 + Psest_2701 0.17 +0.6
2,890,952 - Psest_2701 0.17 -0.5
2,890,952 - Psest_2701 0.17 +0.3
2,890,952 - Psest_2701 0.17 -0.1
2,890,952 - Psest_2701 0.17 -1.0
2,890,952 - Psest_2701 0.17 +0.1
2,890,952 - Psest_2701 0.17 -0.1
2,890,952 - Psest_2701 0.17 +0.2
2,890,987 + Psest_2701 0.20 -1.5
2,890,987 + Psest_2701 0.20 +0.6
2,890,987 + Psest_2701 0.20 -0.0
2,890,987 + Psest_2701 0.20 -0.4
2,890,988 - Psest_2701 0.20 -0.3
2,890,988 - Psest_2701 0.20 -0.7
2,890,988 - Psest_2701 0.20 -0.8
2,890,988 - Psest_2701 0.20 -0.2
2,890,988 - Psest_2701 0.20 -3.0
2,891,066 + Psest_2701 0.27 -0.6
2,891,066 + Psest_2701 0.27 +0.3
2,891,066 + Psest_2701 0.27 +1.4
2,891,067 - Psest_2701 0.27 +0.6
2,891,067 - Psest_2701 0.27 +0.6
2,891,110 + Psest_2701 0.31 +0.4
2,891,110 + Psest_2701 0.31 -0.1
2,891,110 + Psest_2701 0.31 +0.2
2,891,110 + Psest_2701 0.31 -0.2
2,891,111 - Psest_2701 0.31 +0.2
2,891,111 - Psest_2701 0.31 -0.1
2,891,111 - Psest_2701 0.31 -1.0
2,891,111 - Psest_2701 0.31 +0.8
2,891,111 - Psest_2701 0.31 +0.5
2,891,295 + Psest_2701 0.47 +0.3
2,891,295 + Psest_2701 0.47 +0.8
2,891,361 - Psest_2701 0.53 +1.0
2,891,395 + Psest_2701 0.56 +0.2
2,891,395 + Psest_2701 0.56 -0.3
2,891,395 + Psest_2701 0.56 +0.2
2,891,395 + Psest_2701 0.56 -0.1
2,891,396 - Psest_2701 0.56 +0.2
2,891,396 - Psest_2701 0.56 +1.0
2,891,396 - Psest_2701 0.56 -0.4
2,891,456 + Psest_2701 0.61 -0.2
2,891,457 - Psest_2701 0.61 -0.2
2,891,869 - +0.4
2,891,869 - -0.1
2,891,971 + +0.4
2,892,148 + +0.5
2,892,251 + Psest_2702 0.13 +0.7
2,892,252 - Psest_2702 0.13 +0.6
2,892,252 - Psest_2702 0.13 +0.4
2,892,529 - Psest_2702 0.22 +1.4
2,892,530 + Psest_2702 0.22 -1.6
2,892,531 - Psest_2702 0.22 +0.2
2,892,548 + Psest_2702 0.23 -0.5
2,892,549 - Psest_2702 0.23 -0.0
2,892,549 - Psest_2702 0.23 -1.0
2,892,581 + Psest_2702 0.24 +0.3
2,892,581 + Psest_2702 0.24 +0.7
2,892,582 - Psest_2702 0.24 +0.5
2,892,582 - Psest_2702 0.24 +0.3
2,892,599 - Psest_2702 0.25 +0.1
2,892,763 + Psest_2702 0.30 -1.6
2,892,764 - Psest_2702 0.30 -0.4

Or see this region's nucleotide sequence