Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2572 and HP15_2573 are separated by 90 nucleotides HP15_2573 and HP15_2574 are separated by 84 nucleotides HP15_2574 and HP15_2575 are separated by 230 nucleotides
HP15_2572: HP15_2572 - conserved hypothetical protein, secreted, at 2,720,969 to 2,721,265
_2572
HP15_2573: HP15_2573 - conserved hypothetical protein, at 2,721,356 to 2,721,706
_2573
HP15_2574: HP15_2574 - alkane 1-monooxygenase, at 2,721,791 to 2,723,059
_2574
HP15_2575: HP15_2575 - enoyl-CoA hydratase/isomerase family protein carnitinyl-CoA, at 2,723,290 to 2,724,078
_2575
Position (kb)
2721
2722
2723
2724 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2720.821 kb on + strand at 2720.826 kb on + strand at 2721.143 kb on - strand, within HP15_2572 at 2721.177 kb on + strand, within HP15_2572 at 2721.211 kb on + strand, within HP15_2572 at 2721.211 kb on + strand, within HP15_2572 at 2721.303 kb on + strand at 2721.316 kb on - strand at 2721.321 kb on - strand at 2721.358 kb on + strand at 2721.376 kb on - strand at 2721.376 kb on - strand at 2721.466 kb on - strand, within HP15_2573 at 2721.494 kb on + strand, within HP15_2573 at 2721.628 kb on - strand, within HP15_2573 at 2721.640 kb on + strand, within HP15_2573 at 2721.640 kb on + strand, within HP15_2573 at 2721.648 kb on - strand, within HP15_2573 at 2721.708 kb on + strand at 2721.784 kb on - strand at 2721.872 kb on + strand at 2721.880 kb on + strand at 2721.893 kb on - strand at 2721.900 kb on + strand at 2721.900 kb on + strand at 2721.908 kb on - strand at 2721.915 kb on + strand at 2721.939 kb on + strand, within HP15_2574 at 2721.947 kb on - strand, within HP15_2574 at 2721.981 kb on - strand, within HP15_2574 at 2722.008 kb on + strand, within HP15_2574 at 2722.071 kb on + strand, within HP15_2574 at 2722.130 kb on + strand, within HP15_2574 at 2722.175 kb on + strand, within HP15_2574 at 2722.242 kb on + strand, within HP15_2574 at 2722.492 kb on + strand, within HP15_2574 at 2722.492 kb on - strand, within HP15_2574 at 2722.517 kb on + strand, within HP15_2574 at 2722.572 kb on - strand, within HP15_2574 at 2722.632 kb on + strand, within HP15_2574 at 2722.636 kb on + strand, within HP15_2574 at 2722.687 kb on + strand, within HP15_2574 at 2722.962 kb on + strand at 2722.990 kb on + strand at 2722.998 kb on - strand at 2723.003 kb on + strand at 2723.158 kb on - strand at 2723.191 kb on + strand at 2723.298 kb on - strand at 2723.367 kb on - strand at 2723.367 kb on - strand at 2723.386 kb on - strand, within HP15_2575 at 2723.404 kb on + strand, within HP15_2575 at 2723.412 kb on - strand, within HP15_2575 at 2723.446 kb on + strand, within HP15_2575 at 2723.454 kb on - strand, within HP15_2575 at 2723.541 kb on + strand, within HP15_2575 at 2723.712 kb on + strand, within HP15_2575 at 2723.720 kb on - strand, within HP15_2575 at 2723.720 kb on - strand, within HP15_2575 at 2723.727 kb on - strand, within HP15_2575 at 2723.738 kb on - strand, within HP15_2575 at 2723.768 kb on - strand, within HP15_2575 at 2723.840 kb on - strand, within HP15_2575 at 2723.869 kb on + strand, within HP15_2575 at 2723.872 kb on - strand, within HP15_2575 at 2723.909 kb on + strand, within HP15_2575 at 2723.917 kb on - strand, within HP15_2575 at 2723.917 kb on - strand, within HP15_2575 at 2723.997 kb on - strand, within HP15_2575
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 2,720,821 + -0.2 2,720,826 + -1.0 2,721,143 - HP15_2572 0.59 -0.1 2,721,177 + HP15_2572 0.70 -0.0 2,721,211 + HP15_2572 0.81 +0.3 2,721,211 + HP15_2572 0.81 +0.5 2,721,303 + -0.6 2,721,316 - -0.2 2,721,321 - +0.5 2,721,358 + +0.3 2,721,376 - +0.2 2,721,376 - +0.5 2,721,466 - HP15_2573 0.31 -0.1 2,721,494 + HP15_2573 0.39 -1.6 2,721,628 - HP15_2573 0.77 -0.8 2,721,640 + HP15_2573 0.81 +0.9 2,721,640 + HP15_2573 0.81 +0.1 2,721,648 - HP15_2573 0.83 +1.0 2,721,708 + -0.1 2,721,784 - +0.0 2,721,872 + -0.7 2,721,880 + +0.1 2,721,893 - -0.6 2,721,900 + +0.5 2,721,900 + +1.4 2,721,908 - -0.0 2,721,915 + +0.0 2,721,939 + HP15_2574 0.12 -0.6 2,721,947 - HP15_2574 0.12 -0.8 2,721,981 - HP15_2574 0.15 +0.3 2,722,008 + HP15_2574 0.17 +0.2 2,722,071 + HP15_2574 0.22 -0.6 2,722,130 + HP15_2574 0.27 -0.2 2,722,175 + HP15_2574 0.30 +0.3 2,722,242 + HP15_2574 0.36 -0.2 2,722,492 + HP15_2574 0.55 -0.9 2,722,492 - HP15_2574 0.55 -1.3 2,722,517 + HP15_2574 0.57 -1.1 2,722,572 - HP15_2574 0.62 -2.8 2,722,632 + HP15_2574 0.66 +0.8 2,722,636 + HP15_2574 0.67 +0.0 2,722,687 + HP15_2574 0.71 +0.5 2,722,962 + +0.9 2,722,990 + -0.4 2,722,998 - -0.2 2,723,003 + +0.2 2,723,158 - -0.2 2,723,191 + +0.9 2,723,298 - +0.3 2,723,367 - +0.9 2,723,367 - -1.2 2,723,386 - HP15_2575 0.12 +0.0 2,723,404 + HP15_2575 0.14 +1.4 2,723,412 - HP15_2575 0.15 +0.4 2,723,446 + HP15_2575 0.20 -0.6 2,723,454 - HP15_2575 0.21 -0.5 2,723,541 + HP15_2575 0.32 -0.1 2,723,712 + HP15_2575 0.53 +0.2 2,723,720 - HP15_2575 0.54 +0.3 2,723,720 - HP15_2575 0.54 +0.1 2,723,727 - HP15_2575 0.55 -0.4 2,723,738 - HP15_2575 0.57 -0.1 2,723,768 - HP15_2575 0.61 -0.6 2,723,840 - HP15_2575 0.70 +0.4 2,723,869 + HP15_2575 0.73 +1.4 2,723,872 - HP15_2575 0.74 -0.2 2,723,909 + HP15_2575 0.78 +0.1 2,723,917 - HP15_2575 0.79 +0.4 2,723,917 - HP15_2575 0.79 +0.2 2,723,997 - HP15_2575 0.90 -0.9
Or see this region's nucleotide sequence