Strain Fitness in Marinobacter adhaerens HP15 around HP15_255

Experiment: m.b. Paraquat dichloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_253 and HP15_254 are separated by 12 nucleotidesHP15_254 and HP15_255 are separated by 260 nucleotidesHP15_255 and HP15_256 are separated by 7 nucleotides HP15_253: HP15_253 - extracellular solute-binding protein, family 3, at 241,441 to 244,149 _253 HP15_254: HP15_254 - conserved hypothetical protein, at 244,162 to 244,485 _254 HP15_255: HP15_255 - conserved hypothetical protein, at 244,746 to 245,351 _255 HP15_256: HP15_256 - serine protease, at 245,359 to 247,575 _256 Position (kb) 244 245 246Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 243.810 kb on + strand, within HP15_253at 243.813 kb on - strand, within HP15_253at 243.823 kb on - strand, within HP15_253at 243.956 kb on + strandat 243.956 kb on - strandat 244.040 kb on + strandat 244.110 kb on + strandat 244.111 kb on + strandat 244.111 kb on + strandat 244.111 kb on + strandat 244.199 kb on + strand, within HP15_254at 244.230 kb on - strand, within HP15_254at 244.270 kb on - strand, within HP15_254at 244.286 kb on + strand, within HP15_254at 244.286 kb on + strand, within HP15_254at 244.293 kb on - strand, within HP15_254at 244.294 kb on - strand, within HP15_254at 244.296 kb on + strand, within HP15_254at 244.366 kb on + strand, within HP15_254at 244.403 kb on + strand, within HP15_254at 244.715 kb on - strandat 244.779 kb on + strandat 244.823 kb on + strand, within HP15_255at 244.823 kb on + strand, within HP15_255at 244.831 kb on - strand, within HP15_255at 245.030 kb on - strand, within HP15_255at 245.030 kb on - strand, within HP15_255at 245.162 kb on - strand, within HP15_255at 245.176 kb on + strand, within HP15_255at 245.184 kb on - strand, within HP15_255at 245.224 kb on + strand, within HP15_255at 245.232 kb on - strand, within HP15_255at 245.233 kb on + strand, within HP15_255at 245.247 kb on - strand, within HP15_255at 245.313 kb on - strandat 245.367 kb on + strandat 245.398 kb on - strandat 245.398 kb on - strandat 245.433 kb on + strandat 245.448 kb on - strandat 245.459 kb on - strandat 245.459 kb on - strandat 245.470 kb on - strandat 245.490 kb on + strandat 245.600 kb on - strand, within HP15_256at 245.825 kb on - strand, within HP15_256at 245.833 kb on + strand, within HP15_256at 245.923 kb on - strand, within HP15_256at 246.207 kb on - strand, within HP15_256at 246.223 kb on + strand, within HP15_256at 246.230 kb on - strand, within HP15_256at 246.231 kb on - strand, within HP15_256at 246.306 kb on - strand, within HP15_256at 246.338 kb on - strand, within HP15_256

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml
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243,810 + HP15_253 0.87 -1.0
243,813 - HP15_253 0.88 -1.9
243,823 - HP15_253 0.88 -0.1
243,956 + -3.2
243,956 - -1.2
244,040 + -1.4
244,110 + +0.1
244,111 + -1.1
244,111 + -0.7
244,111 + -2.3
244,199 + HP15_254 0.11 +0.3
244,230 - HP15_254 0.21 -0.6
244,270 - HP15_254 0.33 -1.6
244,286 + HP15_254 0.38 -1.3
244,286 + HP15_254 0.38 -1.2
244,293 - HP15_254 0.40 -1.7
244,294 - HP15_254 0.41 -1.0
244,296 + HP15_254 0.41 -1.5
244,366 + HP15_254 0.63 -1.8
244,403 + HP15_254 0.74 -3.1
244,715 - +0.6
244,779 + -2.7
244,823 + HP15_255 0.13 -1.8
244,823 + HP15_255 0.13 -1.4
244,831 - HP15_255 0.14 -1.0
245,030 - HP15_255 0.47 +2.6
245,030 - HP15_255 0.47 +0.4
245,162 - HP15_255 0.69 -1.6
245,176 + HP15_255 0.71 -0.3
245,184 - HP15_255 0.72 -1.8
245,224 + HP15_255 0.79 +0.6
245,232 - HP15_255 0.80 -1.3
245,233 + HP15_255 0.80 -2.8
245,247 - HP15_255 0.83 -1.9
245,313 - -1.2
245,367 + -1.2
245,398 - -0.8
245,398 - -2.6
245,433 + -1.6
245,448 - -0.7
245,459 - -1.4
245,459 - -0.3
245,470 - +0.1
245,490 + -1.2
245,600 - HP15_256 0.11 -0.8
245,825 - HP15_256 0.21 -2.0
245,833 + HP15_256 0.21 -0.8
245,923 - HP15_256 0.25 -0.7
246,207 - HP15_256 0.38 +1.6
246,223 + HP15_256 0.39 -0.5
246,230 - HP15_256 0.39 -1.9
246,231 - HP15_256 0.39 -1.6
246,306 - HP15_256 0.43 -1.0
246,338 - HP15_256 0.44 -1.0

Or see this region's nucleotide sequence