Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2376 and HP15_2377 are separated by 351 nucleotides HP15_2377 and HP15_2378 are separated by 3 nucleotides HP15_2378 and HP15_2379 are separated by 36 nucleotides
HP15_2376: HP15_2376 - conserved hypothetical protein, secreted, at 2,504,746 to 2,505,630
_2376
HP15_2377: HP15_2377 - response regulator receiver protein, at 2,505,982 to 2,507,010
_2377
HP15_2378: HP15_2378 - sensory box/GGDEF family protein, at 2,507,014 to 2,507,967
_2378
HP15_2379: HP15_2379 - transcriptional regulator MvaT, P16 subunit, at 2,508,004 to 2,508,372
_2379
Position (kb)
2505
2506
2507
2508 Strain fitness (log2 ratio)
-1
0
1
2 at 2504.985 kb on - strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2504.998 kb on + strand, within HP15_2376 at 2505.006 kb on - strand, within HP15_2376 at 2505.006 kb on - strand, within HP15_2376 at 2505.006 kb on - strand, within HP15_2376 at 2505.006 kb on - strand, within HP15_2376 at 2505.188 kb on + strand, within HP15_2376 at 2505.196 kb on - strand, within HP15_2376 at 2505.196 kb on - strand, within HP15_2376 at 2505.230 kb on + strand, within HP15_2376 at 2505.232 kb on - strand, within HP15_2376 at 2505.482 kb on + strand, within HP15_2376 at 2505.584 kb on + strand at 2505.592 kb on - strand at 2505.762 kb on + strand at 2505.762 kb on + strand at 2505.768 kb on + strand at 2505.790 kb on - strand at 2505.884 kb on + strand at 2505.971 kb on - strand at 2505.989 kb on + strand at 2506.015 kb on + strand at 2506.047 kb on + strand at 2506.141 kb on + strand, within HP15_2377 at 2506.305 kb on - strand, within HP15_2377 at 2506.337 kb on + strand, within HP15_2377 at 2506.354 kb on - strand, within HP15_2377 at 2506.372 kb on + strand, within HP15_2377 at 2506.475 kb on + strand, within HP15_2377 at 2506.547 kb on + strand, within HP15_2377 at 2506.611 kb on + strand, within HP15_2377 at 2506.746 kb on + strand, within HP15_2377 at 2506.758 kb on + strand, within HP15_2377 at 2506.816 kb on - strand, within HP15_2377 at 2506.825 kb on + strand, within HP15_2377 at 2506.826 kb on - strand, within HP15_2377 at 2506.869 kb on - strand, within HP15_2377 at 2506.913 kb on + strand at 2506.943 kb on + strand at 2507.206 kb on + strand, within HP15_2378 at 2507.247 kb on + strand, within HP15_2378 at 2507.270 kb on + strand, within HP15_2378 at 2507.365 kb on + strand, within HP15_2378 at 2507.378 kb on + strand, within HP15_2378 at 2507.433 kb on - strand, within HP15_2378 at 2507.472 kb on - strand, within HP15_2378 at 2507.571 kb on + strand, within HP15_2378 at 2507.573 kb on + strand, within HP15_2378 at 2507.795 kb on + strand, within HP15_2378 at 2507.795 kb on + strand, within HP15_2378 at 2507.795 kb on + strand, within HP15_2378 at 2507.796 kb on - strand, within HP15_2378 at 2507.803 kb on - strand, within HP15_2378 at 2507.803 kb on - strand, within HP15_2378 at 2507.820 kb on - strand, within HP15_2378 at 2507.830 kb on - strand, within HP15_2378 at 2507.862 kb on - strand, within HP15_2378 at 2507.959 kb on - strand at 2507.963 kb on - strand at 2507.986 kb on + strand at 2508.000 kb on + strand at 2508.005 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 2,504,985 - HP15_2376 0.27 -0.2 2,504,998 + HP15_2376 0.28 +0.5 2,504,998 + HP15_2376 0.28 +0.8 2,504,998 + HP15_2376 0.28 +1.6 2,504,998 + HP15_2376 0.28 -0.5 2,504,998 + HP15_2376 0.28 -0.3 2,504,998 + HP15_2376 0.28 +0.1 2,504,998 + HP15_2376 0.28 -0.7 2,505,006 - HP15_2376 0.29 -0.0 2,505,006 - HP15_2376 0.29 +0.9 2,505,006 - HP15_2376 0.29 +0.1 2,505,006 - HP15_2376 0.29 -0.4 2,505,188 + HP15_2376 0.50 +0.7 2,505,196 - HP15_2376 0.51 -0.1 2,505,196 - HP15_2376 0.51 +0.5 2,505,230 + HP15_2376 0.55 +0.6 2,505,232 - HP15_2376 0.55 -1.1 2,505,482 + HP15_2376 0.83 -0.6 2,505,584 + +0.1 2,505,592 - +0.9 2,505,762 + +0.3 2,505,762 + +0.3 2,505,768 + -1.3 2,505,790 - +0.2 2,505,884 + +0.2 2,505,971 - -0.9 2,505,989 + -0.0 2,506,015 + +0.2 2,506,047 + +0.7 2,506,141 + HP15_2377 0.15 +0.6 2,506,305 - HP15_2377 0.31 +0.6 2,506,337 + HP15_2377 0.34 +0.3 2,506,354 - HP15_2377 0.36 +0.3 2,506,372 + HP15_2377 0.38 +2.6 2,506,475 + HP15_2377 0.48 -0.9 2,506,547 + HP15_2377 0.55 +0.6 2,506,611 + HP15_2377 0.61 +0.1 2,506,746 + HP15_2377 0.74 -0.4 2,506,758 + HP15_2377 0.75 +0.9 2,506,816 - HP15_2377 0.81 +0.5 2,506,825 + HP15_2377 0.82 +0.4 2,506,826 - HP15_2377 0.82 +0.2 2,506,869 - HP15_2377 0.86 +0.3 2,506,913 + +0.4 2,506,943 + +0.9 2,507,206 + HP15_2378 0.20 +1.3 2,507,247 + HP15_2378 0.24 -0.5 2,507,270 + HP15_2378 0.27 +0.9 2,507,365 + HP15_2378 0.37 +0.9 2,507,378 + HP15_2378 0.38 -0.4 2,507,433 - HP15_2378 0.44 +0.9 2,507,472 - HP15_2378 0.48 +0.6 2,507,571 + HP15_2378 0.58 +0.0 2,507,573 + HP15_2378 0.59 -1.0 2,507,795 + HP15_2378 0.82 +0.6 2,507,795 + HP15_2378 0.82 +1.0 2,507,795 + HP15_2378 0.82 +1.0 2,507,796 - HP15_2378 0.82 +0.1 2,507,803 - HP15_2378 0.83 +0.1 2,507,803 - HP15_2378 0.83 +1.1 2,507,820 - HP15_2378 0.84 -0.1 2,507,830 - HP15_2378 0.86 +0.2 2,507,862 - HP15_2378 0.89 -0.0 2,507,959 - +0.6 2,507,963 - +1.0 2,507,986 + -0.2 2,508,000 + -1.4 2,508,005 - +0.1
Or see this region's nucleotide sequence