Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23930 and PGA1_c23940 are separated by 24 nucleotides PGA1_c23940 and PGA1_c23950 are separated by 235 nucleotides
PGA1_c23930: PGA1_c23930 - putative histidinol-phosphate aminotransferase, at 2,497,279 to 2,498,388
_c23930
PGA1_c23940: PGA1_c23940 - putative serine-glyoxylate aminotransferase, at 2,498,413 to 2,499,678
_c23940
PGA1_c23950: PGA1_c23950 - putative lipid A export ATP-binding/permease protein MsbA, at 2,499,914 to 2,501,923
_c23950
Position (kb)
2498
2499
2500 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2497.418 kb on + strand, within PGA1_c23930 at 2497.418 kb on + strand, within PGA1_c23930 at 2497.427 kb on - strand, within PGA1_c23930 at 2497.510 kb on + strand, within PGA1_c23930 at 2497.560 kb on - strand, within PGA1_c23930 at 2497.636 kb on + strand, within PGA1_c23930 at 2497.638 kb on - strand, within PGA1_c23930 at 2497.657 kb on + strand, within PGA1_c23930 at 2497.752 kb on + strand, within PGA1_c23930 at 2497.817 kb on - strand, within PGA1_c23930 at 2497.831 kb on + strand, within PGA1_c23930 at 2497.851 kb on + strand, within PGA1_c23930 at 2497.879 kb on + strand, within PGA1_c23930 at 2497.915 kb on - strand, within PGA1_c23930 at 2497.947 kb on + strand, within PGA1_c23930 at 2497.955 kb on - strand, within PGA1_c23930 at 2497.979 kb on - strand, within PGA1_c23930 at 2498.016 kb on + strand, within PGA1_c23930 at 2498.048 kb on - strand, within PGA1_c23930 at 2498.101 kb on + strand, within PGA1_c23930 at 2498.135 kb on - strand, within PGA1_c23930 at 2498.158 kb on + strand, within PGA1_c23930 at 2498.166 kb on - strand, within PGA1_c23930 at 2498.202 kb on - strand, within PGA1_c23930 at 2498.202 kb on - strand, within PGA1_c23930 at 2498.243 kb on + strand, within PGA1_c23930 at 2498.284 kb on - strand at 2498.383 kb on + strand at 2498.391 kb on - strand at 2498.436 kb on - strand at 2498.573 kb on - strand, within PGA1_c23940 at 2498.625 kb on + strand, within PGA1_c23940 at 2498.633 kb on - strand, within PGA1_c23940 at 2498.648 kb on + strand, within PGA1_c23940 at 2498.683 kb on - strand, within PGA1_c23940 at 2498.790 kb on - strand, within PGA1_c23940 at 2498.790 kb on - strand, within PGA1_c23940 at 2498.829 kb on + strand, within PGA1_c23940 at 2498.873 kb on + strand, within PGA1_c23940 at 2499.116 kb on + strand, within PGA1_c23940 at 2499.117 kb on + strand, within PGA1_c23940 at 2499.131 kb on + strand, within PGA1_c23940 at 2499.149 kb on - strand, within PGA1_c23940 at 2499.234 kb on - strand, within PGA1_c23940 at 2499.310 kb on + strand, within PGA1_c23940 at 2499.380 kb on - strand, within PGA1_c23940 at 2499.421 kb on + strand, within PGA1_c23940 at 2499.437 kb on + strand, within PGA1_c23940 at 2499.442 kb on + strand, within PGA1_c23940 at 2499.445 kb on - strand, within PGA1_c23940 at 2499.445 kb on - strand, within PGA1_c23940 at 2499.453 kb on + strand, within PGA1_c23940 at 2499.517 kb on + strand, within PGA1_c23940 at 2499.520 kb on - strand, within PGA1_c23940 at 2499.530 kb on - strand, within PGA1_c23940 at 2499.594 kb on - strand at 2499.601 kb on - strand at 2499.685 kb on + strand at 2499.693 kb on - strand at 2499.695 kb on - strand at 2499.703 kb on + strand at 2499.706 kb on - strand at 2499.711 kb on - strand at 2499.711 kb on - strand at 2499.711 kb on - strand at 2499.716 kb on - strand at 2499.755 kb on - strand at 2499.795 kb on - strand at 2499.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 2,497,418 + PGA1_c23930 0.13 +2.3 2,497,418 + PGA1_c23930 0.13 +0.8 2,497,427 - PGA1_c23930 0.13 -2.8 2,497,510 + PGA1_c23930 0.21 +0.5 2,497,560 - PGA1_c23930 0.25 +3.3 2,497,636 + PGA1_c23930 0.32 -1.1 2,497,638 - PGA1_c23930 0.32 -0.5 2,497,657 + PGA1_c23930 0.34 -1.8 2,497,752 + PGA1_c23930 0.43 -2.1 2,497,817 - PGA1_c23930 0.48 +2.1 2,497,831 + PGA1_c23930 0.50 +2.1 2,497,851 + PGA1_c23930 0.52 -0.6 2,497,879 + PGA1_c23930 0.54 +0.1 2,497,915 - PGA1_c23930 0.57 +0.5 2,497,947 + PGA1_c23930 0.60 +0.0 2,497,955 - PGA1_c23930 0.61 -1.3 2,497,979 - PGA1_c23930 0.63 +1.5 2,498,016 + PGA1_c23930 0.66 +0.0 2,498,048 - PGA1_c23930 0.69 +0.8 2,498,101 + PGA1_c23930 0.74 +0.9 2,498,135 - PGA1_c23930 0.77 +0.5 2,498,158 + PGA1_c23930 0.79 -0.4 2,498,166 - PGA1_c23930 0.80 +0.5 2,498,202 - PGA1_c23930 0.83 -0.2 2,498,202 - PGA1_c23930 0.83 +0.1 2,498,243 + PGA1_c23930 0.87 +1.0 2,498,284 - +0.0 2,498,383 + +1.3 2,498,391 - -1.8 2,498,436 - -0.1 2,498,573 - PGA1_c23940 0.13 +0.1 2,498,625 + PGA1_c23940 0.17 -0.2 2,498,633 - PGA1_c23940 0.17 +0.5 2,498,648 + PGA1_c23940 0.19 +0.9 2,498,683 - PGA1_c23940 0.21 +2.1 2,498,790 - PGA1_c23940 0.30 +1.1 2,498,790 - PGA1_c23940 0.30 -0.2 2,498,829 + PGA1_c23940 0.33 -0.6 2,498,873 + PGA1_c23940 0.36 +0.8 2,499,116 + PGA1_c23940 0.56 +0.1 2,499,117 + PGA1_c23940 0.56 -2.1 2,499,131 + PGA1_c23940 0.57 +1.0 2,499,149 - PGA1_c23940 0.58 -0.3 2,499,234 - PGA1_c23940 0.65 +0.0 2,499,310 + PGA1_c23940 0.71 +0.9 2,499,380 - PGA1_c23940 0.76 +0.4 2,499,421 + PGA1_c23940 0.80 -0.5 2,499,437 + PGA1_c23940 0.81 +2.4 2,499,442 + PGA1_c23940 0.81 -0.1 2,499,445 - PGA1_c23940 0.82 +0.4 2,499,445 - PGA1_c23940 0.82 +0.2 2,499,453 + PGA1_c23940 0.82 +0.2 2,499,517 + PGA1_c23940 0.87 +1.1 2,499,520 - PGA1_c23940 0.87 +0.5 2,499,530 - PGA1_c23940 0.88 +1.8 2,499,594 - -0.5 2,499,601 - -0.1 2,499,685 + +0.8 2,499,693 - -0.8 2,499,695 - -0.5 2,499,703 + -1.5 2,499,706 - -0.3 2,499,711 - -0.1 2,499,711 - +2.4 2,499,711 - -1.8 2,499,716 - +1.5 2,499,755 - +0.8 2,499,795 - -0.6 2,499,837 + -1.6
Or see this region's nucleotide sequence