Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19900

Experiment: m.b. Phosphomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c19890 and PGA1_c19900 are separated by 62 nucleotidesPGA1_c19900 and PGA1_c19910 are separated by 42 nucleotidesPGA1_c19910 and PGA1_c19920 are separated by 44 nucleotides PGA1_c19890: PGA1_c19890 - peptide chain release factor 1, at 2,064,644 to 2,065,699 _c19890 PGA1_c19900: PGA1_c19900 - hypothetical protein, at 2,065,762 to 2,066,160 _c19900 PGA1_c19910: PGA1_c19910 - Protein of unknown function (DUF1499)., at 2,066,203 to 2,066,625 _c19910 PGA1_c19920: PGA1_c19920 - agmatinase SpeB, at 2,066,670 to 2,067,617 _c19920 Position (kb) 2065 2066 2067Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2065.901 kb on - strand, within PGA1_c19900at 2065.901 kb on - strand, within PGA1_c19900at 2065.985 kb on + strand, within PGA1_c19900at 2066.009 kb on + strand, within PGA1_c19900at 2066.028 kb on + strand, within PGA1_c19900at 2066.028 kb on + strand, within PGA1_c19900at 2066.036 kb on - strand, within PGA1_c19900at 2066.149 kb on + strandat 2066.157 kb on - strandat 2066.157 kb on - strandat 2066.216 kb on + strandat 2066.216 kb on + strandat 2066.216 kb on + strandat 2066.216 kb on + strandat 2066.224 kb on - strandat 2066.224 kb on - strandat 2066.245 kb on - strandat 2066.273 kb on - strand, within PGA1_c19910at 2066.294 kb on - strand, within PGA1_c19910at 2066.403 kb on + strand, within PGA1_c19910at 2066.453 kb on - strand, within PGA1_c19910at 2066.566 kb on + strand, within PGA1_c19910at 2066.614 kb on + strandat 2066.695 kb on + strandat 2066.785 kb on + strand, within PGA1_c19920at 2066.801 kb on - strand, within PGA1_c19920at 2066.817 kb on - strand, within PGA1_c19920at 2066.885 kb on + strand, within PGA1_c19920at 2066.961 kb on - strand, within PGA1_c19920at 2067.007 kb on + strand, within PGA1_c19920at 2067.007 kb on + strand, within PGA1_c19920at 2067.015 kb on - strand, within PGA1_c19920at 2067.049 kb on + strand, within PGA1_c19920at 2067.053 kb on + strand, within PGA1_c19920at 2067.095 kb on - strand, within PGA1_c19920at 2067.106 kb on - strand, within PGA1_c19920at 2067.109 kb on + strand, within PGA1_c19920

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml
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2,065,901 - PGA1_c19900 0.35 +1.0
2,065,901 - PGA1_c19900 0.35 +0.9
2,065,985 + PGA1_c19900 0.56 +0.4
2,066,009 + PGA1_c19900 0.62 +0.8
2,066,028 + PGA1_c19900 0.67 +2.4
2,066,028 + PGA1_c19900 0.67 +3.0
2,066,036 - PGA1_c19900 0.69 -1.1
2,066,149 + +0.9
2,066,157 - +1.0
2,066,157 - -0.6
2,066,216 + -1.1
2,066,216 + -0.7
2,066,216 + +0.4
2,066,216 + -2.1
2,066,224 - +1.0
2,066,224 - -0.1
2,066,245 - +0.2
2,066,273 - PGA1_c19910 0.17 +0.4
2,066,294 - PGA1_c19910 0.22 -0.9
2,066,403 + PGA1_c19910 0.47 -0.3
2,066,453 - PGA1_c19910 0.59 -3.1
2,066,566 + PGA1_c19910 0.86 +0.4
2,066,614 + +0.4
2,066,695 + -0.4
2,066,785 + PGA1_c19920 0.12 +0.9
2,066,801 - PGA1_c19920 0.14 +0.7
2,066,817 - PGA1_c19920 0.16 +1.4
2,066,885 + PGA1_c19920 0.23 -0.6
2,066,961 - PGA1_c19920 0.31 +0.9
2,067,007 + PGA1_c19920 0.36 -0.1
2,067,007 + PGA1_c19920 0.36 +2.7
2,067,015 - PGA1_c19920 0.36 +1.2
2,067,049 + PGA1_c19920 0.40 +1.0
2,067,053 + PGA1_c19920 0.40 +1.4
2,067,095 - PGA1_c19920 0.45 -0.9
2,067,106 - PGA1_c19920 0.46 +0.2
2,067,109 + PGA1_c19920 0.46 -0.4

Or see this region's nucleotide sequence