Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1420 and HP15_1421 overlap by 1 nucleotides HP15_1421 and HP15_1422 overlap by 4 nucleotides HP15_1422 and HP15_1423 are separated by 88 nucleotides HP15_1423 and HP15_1424 are separated by 64 nucleotides
HP15_1420: HP15_1420 - putative amino acid ABC transporter permease protein, at 1,504,050 to 1,504,715
_1420
HP15_1421: HP15_1421 - ABC transporter, membrane spanning protein, at 1,504,715 to 1,505,368
_1421
HP15_1422: HP15_1422 - amino acid ABC transporter ATP-binding protein, at 1,505,365 to 1,506,087
_1422
HP15_1423: HP15_1423 - conserved hypothetical protein, secreted, at 1,506,176 to 1,506,568
_1423
HP15_1424: HP15_1424 - short-chain dehydrogenase/reductase SDR, at 1,506,633 to 1,507,334
_1424
Position (kb)
1505
1506
1507 Strain fitness (log2 ratio)
-1
0
1
2 at 1504.417 kb on - strand, within HP15_1420 at 1504.443 kb on + strand, within HP15_1420 at 1504.523 kb on - strand, within HP15_1420 at 1504.680 kb on - strand at 1504.755 kb on + strand at 1504.763 kb on - strand at 1504.767 kb on - strand at 1504.803 kb on + strand, within HP15_1421 at 1504.916 kb on - strand, within HP15_1421 at 1504.916 kb on - strand, within HP15_1421 at 1505.026 kb on - strand, within HP15_1421 at 1505.181 kb on + strand, within HP15_1421 at 1505.203 kb on + strand, within HP15_1421 at 1505.518 kb on - strand, within HP15_1422 at 1505.549 kb on + strand, within HP15_1422 at 1505.644 kb on + strand, within HP15_1422 at 1505.815 kb on - strand, within HP15_1422 at 1505.820 kb on - strand, within HP15_1422 at 1505.867 kb on + strand, within HP15_1422 at 1505.875 kb on - strand, within HP15_1422 at 1505.887 kb on + strand, within HP15_1422 at 1505.926 kb on + strand, within HP15_1422 at 1505.964 kb on + strand, within HP15_1422 at 1506.198 kb on + strand at 1506.198 kb on + strand at 1506.316 kb on - strand, within HP15_1423 at 1506.335 kb on + strand, within HP15_1423 at 1506.335 kb on + strand, within HP15_1423 at 1506.357 kb on - strand, within HP15_1423 at 1506.374 kb on + strand, within HP15_1423 at 1506.437 kb on - strand, within HP15_1423 at 1506.473 kb on - strand, within HP15_1423 at 1506.636 kb on + strand at 1506.702 kb on - strand at 1506.771 kb on - strand, within HP15_1424 at 1506.827 kb on + strand, within HP15_1424 at 1506.849 kb on + strand, within HP15_1424
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 1,504,417 - HP15_1420 0.55 +0.3 1,504,443 + HP15_1420 0.59 +0.2 1,504,523 - HP15_1420 0.71 +0.1 1,504,680 - -0.4 1,504,755 + +0.6 1,504,763 - +1.9 1,504,767 - -0.0 1,504,803 + HP15_1421 0.13 +1.1 1,504,916 - HP15_1421 0.31 -0.0 1,504,916 - HP15_1421 0.31 -0.5 1,505,026 - HP15_1421 0.48 -0.9 1,505,181 + HP15_1421 0.71 -0.8 1,505,203 + HP15_1421 0.75 -0.1 1,505,518 - HP15_1422 0.21 -0.3 1,505,549 + HP15_1422 0.25 -0.1 1,505,644 + HP15_1422 0.39 -0.2 1,505,815 - HP15_1422 0.62 -0.6 1,505,820 - HP15_1422 0.63 -0.8 1,505,867 + HP15_1422 0.69 +0.2 1,505,875 - HP15_1422 0.71 -0.7 1,505,887 + HP15_1422 0.72 +0.2 1,505,926 + HP15_1422 0.78 +0.3 1,505,964 + HP15_1422 0.83 -0.2 1,506,198 + +0.7 1,506,198 + -0.1 1,506,316 - HP15_1423 0.36 -0.0 1,506,335 + HP15_1423 0.40 -0.4 1,506,335 + HP15_1423 0.40 +0.5 1,506,357 - HP15_1423 0.46 -0.2 1,506,374 + HP15_1423 0.50 +0.3 1,506,437 - HP15_1423 0.66 -0.2 1,506,473 - HP15_1423 0.76 +0.8 1,506,636 + +0.1 1,506,702 - +1.0 1,506,771 - HP15_1424 0.20 +1.1 1,506,827 + HP15_1424 0.28 +0.2 1,506,849 + HP15_1424 0.31 +1.1
Or see this region's nucleotide sequence