Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14600 and PGA1_c14610 are separated by 143 nucleotides PGA1_c14610 and PGA1_c14630 are separated by 239 nucleotides
PGA1_c14600: PGA1_c14600 - hypothetical protein, at 1,514,404 to 1,515,984
_c14600
PGA1_c14610: PGA1_c14610 - GMP synthase, at 1,516,128 to 1,517,696
_c14610
PGA1_c14630: PGA1_c14630 - trimethylamine methyltransferase MttB, at 1,517,936 to 1,519,489
_c14630
Position (kb)
1516
1517
1518 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1515.176 kb on - strand, within PGA1_c14600 at 1515.184 kb on + strand, within PGA1_c14600 at 1515.196 kb on - strand, within PGA1_c14600 at 1515.217 kb on + strand, within PGA1_c14600 at 1515.234 kb on + strand, within PGA1_c14600 at 1515.242 kb on - strand, within PGA1_c14600 at 1515.242 kb on - strand, within PGA1_c14600 at 1515.336 kb on - strand, within PGA1_c14600 at 1515.336 kb on - strand, within PGA1_c14600 at 1515.375 kb on + strand, within PGA1_c14600 at 1515.456 kb on + strand, within PGA1_c14600 at 1515.480 kb on + strand, within PGA1_c14600 at 1515.504 kb on - strand, within PGA1_c14600 at 1515.542 kb on - strand, within PGA1_c14600 at 1515.544 kb on + strand, within PGA1_c14600 at 1515.544 kb on + strand, within PGA1_c14600 at 1515.551 kb on + strand, within PGA1_c14600 at 1515.552 kb on - strand, within PGA1_c14600 at 1515.552 kb on - strand, within PGA1_c14600 at 1515.552 kb on - strand, within PGA1_c14600 at 1515.552 kb on - strand, within PGA1_c14600 at 1515.552 kb on - strand, within PGA1_c14600 at 1515.552 kb on - strand, within PGA1_c14600 at 1515.561 kb on - strand, within PGA1_c14600 at 1515.598 kb on - strand, within PGA1_c14600 at 1515.633 kb on + strand, within PGA1_c14600 at 1515.653 kb on - strand, within PGA1_c14600 at 1515.678 kb on + strand, within PGA1_c14600 at 1515.678 kb on + strand, within PGA1_c14600 at 1515.678 kb on + strand, within PGA1_c14600 at 1515.678 kb on + strand, within PGA1_c14600 at 1515.678 kb on + strand, within PGA1_c14600 at 1515.686 kb on - strand, within PGA1_c14600 at 1515.686 kb on - strand, within PGA1_c14600 at 1515.686 kb on - strand, within PGA1_c14600 at 1515.686 kb on - strand, within PGA1_c14600 at 1515.686 kb on - strand, within PGA1_c14600 at 1515.686 kb on - strand, within PGA1_c14600 at 1515.703 kb on - strand, within PGA1_c14600 at 1515.709 kb on + strand, within PGA1_c14600 at 1515.709 kb on - strand, within PGA1_c14600 at 1515.709 kb on - strand, within PGA1_c14600 at 1515.734 kb on + strand, within PGA1_c14600 at 1515.739 kb on + strand, within PGA1_c14600 at 1515.739 kb on + strand, within PGA1_c14600 at 1515.739 kb on + strand, within PGA1_c14600 at 1515.742 kb on - strand, within PGA1_c14600 at 1515.747 kb on - strand, within PGA1_c14600 at 1515.749 kb on + strand, within PGA1_c14600 at 1515.799 kb on + strand, within PGA1_c14600 at 1515.799 kb on + strand, within PGA1_c14600 at 1515.799 kb on + strand, within PGA1_c14600 at 1515.799 kb on + strand, within PGA1_c14600 at 1515.799 kb on + strand, within PGA1_c14600 at 1515.799 kb on + strand, within PGA1_c14600 at 1515.799 kb on + strand, within PGA1_c14600 at 1515.799 kb on + strand, within PGA1_c14600 at 1515.799 kb on + strand, within PGA1_c14600 at 1515.807 kb on - strand, within PGA1_c14600 at 1515.807 kb on - strand, within PGA1_c14600 at 1515.807 kb on - strand, within PGA1_c14600 at 1515.807 kb on - strand, within PGA1_c14600 at 1515.807 kb on - strand, within PGA1_c14600 at 1515.807 kb on - strand, within PGA1_c14600 at 1515.807 kb on - strand, within PGA1_c14600 at 1515.807 kb on - strand, within PGA1_c14600 at 1515.807 kb on - strand, within PGA1_c14600 at 1515.807 kb on - strand, within PGA1_c14600 at 1515.807 kb on - strand, within PGA1_c14600 at 1515.814 kb on + strand, within PGA1_c14600 at 1515.821 kb on + strand, within PGA1_c14600 at 1515.827 kb on + strand at 1515.827 kb on + strand at 1515.832 kb on + strand at 1515.832 kb on + strand at 1515.835 kb on - strand at 1515.840 kb on + strand at 1515.840 kb on - strand at 1515.840 kb on - strand at 1515.850 kb on + strand at 1515.858 kb on + strand at 1515.858 kb on - strand at 1515.864 kb on + strand at 1515.868 kb on + strand at 1515.868 kb on + strand at 1515.880 kb on - strand at 1515.899 kb on + strand at 1515.899 kb on + strand at 1515.899 kb on + strand at 1515.899 kb on + strand at 1515.899 kb on + strand at 1515.907 kb on - strand at 1515.907 kb on - strand at 1515.907 kb on - strand at 1515.907 kb on - strand at 1515.907 kb on - strand at 1515.907 kb on - strand at 1515.909 kb on + strand at 1515.909 kb on + strand at 1515.909 kb on - strand at 1515.929 kb on + strand at 1515.937 kb on - strand at 1515.954 kb on + strand at 1515.962 kb on - strand at 1515.999 kb on + strand at 1515.999 kb on + strand at 1515.999 kb on + strand at 1515.999 kb on + strand at 1515.999 kb on + strand at 1515.999 kb on + strand at 1515.999 kb on + strand at 1515.999 kb on + strand at 1515.999 kb on + strand at 1515.999 kb on + strand at 1515.999 kb on + strand at 1515.999 kb on + strand at 1515.999 kb on + strand at 1516.007 kb on - strand at 1516.007 kb on - strand at 1516.007 kb on - strand at 1516.007 kb on - strand at 1516.007 kb on - strand at 1516.007 kb on - strand at 1516.007 kb on - strand at 1516.007 kb on - strand at 1516.010 kb on + strand at 1516.011 kb on + strand at 1516.120 kb on - strand at 1516.125 kb on + strand at 1517.794 kb on - strand at 1517.812 kb on - strand at 1517.868 kb on - strand at 1517.885 kb on - strand at 1517.975 kb on + strand at 1517.985 kb on - strand at 1518.005 kb on + strand at 1518.005 kb on + strand at 1518.005 kb on + strand at 1518.005 kb on + strand at 1518.005 kb on + strand at 1518.005 kb on + strand at 1518.005 kb on + strand at 1518.319 kb on + strand, within PGA1_c14630 at 1518.328 kb on + strand, within PGA1_c14630 at 1518.356 kb on + strand, within PGA1_c14630 at 1518.383 kb on - strand, within PGA1_c14630 at 1518.420 kb on - strand, within PGA1_c14630 at 1518.593 kb on - strand, within PGA1_c14630 at 1518.616 kb on + strand, within PGA1_c14630 at 1518.624 kb on - strand, within PGA1_c14630
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 1,515,176 - PGA1_c14600 0.49 -0.7 1,515,184 + PGA1_c14600 0.49 +0.6 1,515,196 - PGA1_c14600 0.50 -0.0 1,515,217 + PGA1_c14600 0.51 -0.8 1,515,234 + PGA1_c14600 0.52 +0.2 1,515,242 - PGA1_c14600 0.53 -1.7 1,515,242 - PGA1_c14600 0.53 +2.3 1,515,336 - PGA1_c14600 0.59 +0.2 1,515,336 - PGA1_c14600 0.59 +0.4 1,515,375 + PGA1_c14600 0.61 -0.7 1,515,456 + PGA1_c14600 0.67 +0.5 1,515,480 + PGA1_c14600 0.68 +0.4 1,515,504 - PGA1_c14600 0.70 +0.2 1,515,542 - PGA1_c14600 0.72 +0.4 1,515,544 + PGA1_c14600 0.72 +0.4 1,515,544 + PGA1_c14600 0.72 -1.4 1,515,551 + PGA1_c14600 0.73 +0.4 1,515,552 - PGA1_c14600 0.73 -0.3 1,515,552 - PGA1_c14600 0.73 +0.3 1,515,552 - PGA1_c14600 0.73 +0.6 1,515,552 - PGA1_c14600 0.73 +1.8 1,515,552 - PGA1_c14600 0.73 -0.2 1,515,552 - PGA1_c14600 0.73 +1.6 1,515,561 - PGA1_c14600 0.73 +0.7 1,515,598 - PGA1_c14600 0.76 +2.6 1,515,633 + PGA1_c14600 0.78 +0.2 1,515,653 - PGA1_c14600 0.79 -1.4 1,515,678 + PGA1_c14600 0.81 -2.4 1,515,678 + PGA1_c14600 0.81 -0.4 1,515,678 + PGA1_c14600 0.81 -0.5 1,515,678 + PGA1_c14600 0.81 +1.4 1,515,678 + PGA1_c14600 0.81 +0.1 1,515,686 - PGA1_c14600 0.81 +0.4 1,515,686 - PGA1_c14600 0.81 -0.7 1,515,686 - PGA1_c14600 0.81 -1.4 1,515,686 - PGA1_c14600 0.81 +0.2 1,515,686 - PGA1_c14600 0.81 -0.1 1,515,686 - PGA1_c14600 0.81 -0.4 1,515,703 - PGA1_c14600 0.82 -0.2 1,515,709 + PGA1_c14600 0.83 +1.9 1,515,709 - PGA1_c14600 0.83 -0.7 1,515,709 - PGA1_c14600 0.83 -0.2 1,515,734 + PGA1_c14600 0.84 -0.7 1,515,739 + PGA1_c14600 0.84 -0.9 1,515,739 + PGA1_c14600 0.84 +0.7 1,515,739 + PGA1_c14600 0.84 -0.3 1,515,742 - PGA1_c14600 0.85 +0.2 1,515,747 - PGA1_c14600 0.85 +0.3 1,515,749 + PGA1_c14600 0.85 +1.1 1,515,799 + PGA1_c14600 0.88 -0.4 1,515,799 + PGA1_c14600 0.88 +0.1 1,515,799 + PGA1_c14600 0.88 -0.0 1,515,799 + PGA1_c14600 0.88 -0.2 1,515,799 + PGA1_c14600 0.88 +1.3 1,515,799 + PGA1_c14600 0.88 -1.3 1,515,799 + PGA1_c14600 0.88 -2.4 1,515,799 + PGA1_c14600 0.88 +0.7 1,515,799 + PGA1_c14600 0.88 -0.7 1,515,807 - PGA1_c14600 0.89 -0.9 1,515,807 - PGA1_c14600 0.89 -0.9 1,515,807 - PGA1_c14600 0.89 -1.7 1,515,807 - PGA1_c14600 0.89 -1.2 1,515,807 - PGA1_c14600 0.89 +0.2 1,515,807 - PGA1_c14600 0.89 -1.1 1,515,807 - PGA1_c14600 0.89 -0.9 1,515,807 - PGA1_c14600 0.89 +2.9 1,515,807 - PGA1_c14600 0.89 +0.7 1,515,807 - PGA1_c14600 0.89 +0.8 1,515,807 - PGA1_c14600 0.89 +0.8 1,515,814 + PGA1_c14600 0.89 -1.7 1,515,821 + PGA1_c14600 0.90 -0.7 1,515,827 + +0.2 1,515,827 + +0.6 1,515,832 + +1.5 1,515,832 + +0.6 1,515,835 - +0.3 1,515,840 + +0.6 1,515,840 - -0.5 1,515,840 - -0.2 1,515,850 + +1.2 1,515,858 + -0.0 1,515,858 - -0.6 1,515,864 + -0.4 1,515,868 + -0.7 1,515,868 + +0.9 1,515,880 - -0.4 1,515,899 + -0.0 1,515,899 + +0.6 1,515,899 + +1.3 1,515,899 + +0.5 1,515,899 + +0.4 1,515,907 - -0.2 1,515,907 - +0.8 1,515,907 - -1.5 1,515,907 - +2.6 1,515,907 - -0.5 1,515,907 - -1.0 1,515,909 + -0.6 1,515,909 + -1.0 1,515,909 - -0.7 1,515,929 + +0.3 1,515,937 - +0.2 1,515,954 + -0.5 1,515,962 - -0.7 1,515,999 + +0.2 1,515,999 + +0.5 1,515,999 + -1.1 1,515,999 + +0.6 1,515,999 + +0.2 1,515,999 + -1.4 1,515,999 + +0.8 1,515,999 + -0.2 1,515,999 + +0.4 1,515,999 + +0.0 1,515,999 + +1.0 1,515,999 + -0.0 1,515,999 + -0.7 1,516,007 - +0.3 1,516,007 - -0.0 1,516,007 - -0.1 1,516,007 - +0.4 1,516,007 - -1.0 1,516,007 - -0.0 1,516,007 - +1.0 1,516,007 - +0.5 1,516,010 + -0.6 1,516,011 + +0.2 1,516,120 - +0.3 1,516,125 + +0.7 1,517,794 - +1.7 1,517,812 - -0.2 1,517,868 - +0.6 1,517,885 - +0.4 1,517,975 + +0.2 1,517,985 - -0.0 1,518,005 + +1.4 1,518,005 + +0.3 1,518,005 + -1.2 1,518,005 + -0.2 1,518,005 + +0.8 1,518,005 + -1.4 1,518,005 + -0.9 1,518,319 + PGA1_c14630 0.25 -1.2 1,518,328 + PGA1_c14630 0.25 -0.4 1,518,356 + PGA1_c14630 0.27 -1.1 1,518,383 - PGA1_c14630 0.29 +0.3 1,518,420 - PGA1_c14630 0.31 -2.4 1,518,593 - PGA1_c14630 0.42 +1.0 1,518,616 + PGA1_c14630 0.44 -1.4 1,518,624 - PGA1_c14630 0.44 +0.7
Or see this region's nucleotide sequence