Strain Fitness in Marinobacter adhaerens HP15 around HP15_1097

Experiment: m.b. Paraquat dichloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1095 and HP15_1096 are separated by 140 nucleotidesHP15_1096 and HP15_1097 overlap by 4 nucleotidesHP15_1097 and HP15_1098 are separated by 2 nucleotidesHP15_1098 and HP15_1099 are separated by 12 nucleotides HP15_1095: HP15_1095 - porin, at 1,121,816 to 1,122,769 _1095 HP15_1096: HP15_1096 - branched-chain amino acid ABC transporter, ATP-binding protein, at 1,122,910 to 1,123,623 _1096 HP15_1097: HP15_1097 - branched-chain amino acid ABC transporter, ATP-binding protein, at 1,123,620 to 1,124,387 _1097 HP15_1098: HP15_1098 - inner-membrane translocator, at 1,124,390 to 1,125,346 _1098 HP15_1099: HP15_1099 - inner-membrane translocator, at 1,125,359 to 1,126,222 _1099 Position (kb) 1123 1124 1125Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1122.769 kb on + strandat 1122.769 kb on + strandat 1123.123 kb on + strand, within HP15_1096at 1123.173 kb on - strand, within HP15_1096at 1123.224 kb on + strand, within HP15_1096at 1123.258 kb on + strand, within HP15_1096at 1123.485 kb on - strand, within HP15_1096at 1123.492 kb on - strand, within HP15_1096at 1123.492 kb on - strand, within HP15_1096at 1123.497 kb on - strand, within HP15_1096at 1123.586 kb on + strandat 1123.594 kb on - strandat 1123.594 kb on - strandat 1123.717 kb on + strand, within HP15_1097at 1123.789 kb on - strand, within HP15_1097at 1123.789 kb on - strand, within HP15_1097at 1123.856 kb on + strand, within HP15_1097at 1123.946 kb on + strand, within HP15_1097at 1124.095 kb on - strand, within HP15_1097at 1124.181 kb on - strand, within HP15_1097at 1124.217 kb on - strand, within HP15_1097at 1124.232 kb on - strand, within HP15_1097at 1124.246 kb on - strand, within HP15_1097at 1124.263 kb on + strand, within HP15_1097at 1124.284 kb on + strand, within HP15_1097at 1124.291 kb on - strand, within HP15_1097at 1124.296 kb on + strand, within HP15_1097at 1124.420 kb on + strandat 1124.428 kb on - strandat 1124.476 kb on + strandat 1124.590 kb on - strand, within HP15_1098at 1124.609 kb on + strand, within HP15_1098at 1124.920 kb on + strand, within HP15_1098at 1125.052 kb on + strand, within HP15_1098at 1125.060 kb on - strand, within HP15_1098at 1125.078 kb on + strand, within HP15_1098at 1125.111 kb on + strand, within HP15_1098at 1125.111 kb on + strand, within HP15_1098at 1125.144 kb on + strand, within HP15_1098at 1125.144 kb on + strand, within HP15_1098at 1125.144 kb on + strand, within HP15_1098at 1125.152 kb on - strand, within HP15_1098at 1125.152 kb on - strand, within HP15_1098at 1125.152 kb on - strand, within HP15_1098at 1125.152 kb on - strand, within HP15_1098at 1125.152 kb on - strand, within HP15_1098at 1125.160 kb on + strand, within HP15_1098at 1125.224 kb on + strand, within HP15_1098at 1125.229 kb on - strand, within HP15_1098at 1125.267 kb on + strandat 1125.375 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml
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1,122,769 + +0.0
1,122,769 + -0.3
1,123,123 + HP15_1096 0.30 -0.1
1,123,173 - HP15_1096 0.37 -0.4
1,123,224 + HP15_1096 0.44 -0.8
1,123,258 + HP15_1096 0.49 -0.5
1,123,485 - HP15_1096 0.81 -0.6
1,123,492 - HP15_1096 0.82 -0.4
1,123,492 - HP15_1096 0.82 -0.9
1,123,497 - HP15_1096 0.82 -0.4
1,123,586 + -0.9
1,123,594 - -0.8
1,123,594 - -1.2
1,123,717 + HP15_1097 0.13 -0.5
1,123,789 - HP15_1097 0.22 -2.6
1,123,789 - HP15_1097 0.22 +0.6
1,123,856 + HP15_1097 0.31 +0.6
1,123,946 + HP15_1097 0.42 -0.7
1,124,095 - HP15_1097 0.62 +1.0
1,124,181 - HP15_1097 0.73 -1.9
1,124,217 - HP15_1097 0.78 +0.2
1,124,232 - HP15_1097 0.80 -0.2
1,124,246 - HP15_1097 0.82 -0.9
1,124,263 + HP15_1097 0.84 -0.4
1,124,284 + HP15_1097 0.86 +0.6
1,124,291 - HP15_1097 0.87 -0.4
1,124,296 + HP15_1097 0.88 -0.6
1,124,420 + -0.6
1,124,428 - -1.2
1,124,476 + +0.4
1,124,590 - HP15_1098 0.21 -0.8
1,124,609 + HP15_1098 0.23 -0.8
1,124,920 + HP15_1098 0.55 +1.1
1,125,052 + HP15_1098 0.69 -0.7
1,125,060 - HP15_1098 0.70 -1.1
1,125,078 + HP15_1098 0.72 +0.6
1,125,111 + HP15_1098 0.75 -0.3
1,125,111 + HP15_1098 0.75 +4.0
1,125,144 + HP15_1098 0.79 +0.7
1,125,144 + HP15_1098 0.79 +1.4
1,125,144 + HP15_1098 0.79 -0.6
1,125,152 - HP15_1098 0.80 -1.0
1,125,152 - HP15_1098 0.80 -0.2
1,125,152 - HP15_1098 0.80 -1.7
1,125,152 - HP15_1098 0.80 -0.1
1,125,152 - HP15_1098 0.80 +1.5
1,125,160 + HP15_1098 0.80 +2.0
1,125,224 + HP15_1098 0.87 -0.3
1,125,229 - HP15_1098 0.88 -0.1
1,125,267 + -0.3
1,125,375 + +0.5

Or see this region's nucleotide sequence