Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1044 and HP15_1045 are separated by 71 nucleotides HP15_1045 and HP15_1047 are separated by 114 nucleotides HP15_1047 and HP15_1046 are separated by 81 nucleotides HP15_1046 and HP15_1048 are separated by 164 nucleotides
HP15_1044: HP15_1044 - lysine exporter protein (LYSE/YGGA), at 1,065,220 to 1,065,858
_1044
HP15_1045: HP15_1045 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein, at 1,065,930 to 1,066,289
_1045
HP15_1047: HP15_1047 - DNA mismatch repair protein MutS, at 1,066,404 to 1,069,034
_1047
HP15_1046: HP15_1046 - competence damage-inducible protein A, at 1,069,116 to 1,069,616
_1046
HP15_1048: HP15_1048 - recombinase A, at 1,069,781 to 1,070,827
_1048
Position (kb)
1066
1067
1068
1069
1070 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1065.405 kb on - strand, within HP15_1044 at 1065.408 kb on + strand, within HP15_1044 at 1065.627 kb on + strand, within HP15_1044 at 1065.637 kb on + strand, within HP15_1044 at 1065.674 kb on + strand, within HP15_1044 at 1065.690 kb on + strand, within HP15_1044 at 1065.723 kb on + strand, within HP15_1044 at 1065.724 kb on - strand, within HP15_1044 at 1065.749 kb on - strand, within HP15_1044 at 1065.846 kb on + strand at 1066.331 kb on + strand at 1066.372 kb on + strand at 1066.372 kb on + strand at 1066.391 kb on + strand at 1066.399 kb on - strand at 1066.427 kb on - strand at 1066.509 kb on - strand at 1066.516 kb on - strand at 1066.582 kb on - strand at 1066.599 kb on + strand at 1066.635 kb on - strand at 1066.641 kb on - strand at 1066.711 kb on + strand, within HP15_1047 at 1066.719 kb on - strand, within HP15_1047 at 1066.856 kb on + strand, within HP15_1047 at 1066.886 kb on - strand, within HP15_1047 at 1066.892 kb on - strand, within HP15_1047 at 1066.897 kb on + strand, within HP15_1047 at 1066.924 kb on - strand, within HP15_1047 at 1066.937 kb on + strand, within HP15_1047 at 1066.955 kb on + strand, within HP15_1047 at 1066.980 kb on + strand, within HP15_1047 at 1067.127 kb on - strand, within HP15_1047 at 1067.188 kb on + strand, within HP15_1047 at 1067.234 kb on + strand, within HP15_1047 at 1067.241 kb on + strand, within HP15_1047 at 1067.242 kb on + strand, within HP15_1047 at 1067.278 kb on - strand, within HP15_1047 at 1067.320 kb on - strand, within HP15_1047 at 1067.343 kb on - strand, within HP15_1047 at 1067.442 kb on + strand, within HP15_1047 at 1067.460 kb on + strand at 1067.475 kb on - strand, within HP15_1047 at 1067.475 kb on - strand, within HP15_1047 at 1067.769 kb on + strand, within HP15_1047 at 1067.769 kb on + strand, within HP15_1047 at 1067.769 kb on + strand, within HP15_1047 at 1067.769 kb on + strand, within HP15_1047 at 1067.777 kb on - strand, within HP15_1047 at 1067.894 kb on + strand, within HP15_1047 at 1067.959 kb on - strand, within HP15_1047 at 1068.033 kb on + strand, within HP15_1047 at 1068.054 kb on - strand, within HP15_1047 at 1068.144 kb on + strand, within HP15_1047 at 1068.162 kb on + strand, within HP15_1047 at 1068.164 kb on - strand, within HP15_1047 at 1068.164 kb on - strand, within HP15_1047 at 1068.248 kb on + strand, within HP15_1047 at 1068.248 kb on + strand, within HP15_1047 at 1068.606 kb on - strand, within HP15_1047 at 1068.608 kb on + strand, within HP15_1047 at 1068.616 kb on - strand, within HP15_1047 at 1068.723 kb on - strand, within HP15_1047 at 1068.793 kb on + strand at 1068.877 kb on - strand at 1068.877 kb on - strand at 1068.897 kb on + strand at 1068.907 kb on + strand at 1068.915 kb on - strand at 1069.038 kb on - strand at 1069.118 kb on + strand at 1069.394 kb on + strand, within HP15_1046 at 1069.432 kb on - strand, within HP15_1046 at 1069.488 kb on + strand, within HP15_1046
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 1,065,405 - HP15_1044 0.29 +0.5 1,065,408 + HP15_1044 0.29 +0.4 1,065,627 + HP15_1044 0.64 +1.6 1,065,637 + HP15_1044 0.65 -0.1 1,065,674 + HP15_1044 0.71 +0.2 1,065,690 + HP15_1044 0.74 -0.1 1,065,723 + HP15_1044 0.79 +0.7 1,065,724 - HP15_1044 0.79 +0.5 1,065,749 - HP15_1044 0.83 +0.2 1,065,846 + +0.7 1,066,331 + -1.0 1,066,372 + +0.3 1,066,372 + +1.0 1,066,391 + +1.4 1,066,399 - +0.6 1,066,427 - +0.2 1,066,509 - +2.2 1,066,516 - +0.6 1,066,582 - +0.5 1,066,599 + +0.2 1,066,635 - -0.5 1,066,641 - +1.9 1,066,711 + HP15_1047 0.12 +0.2 1,066,719 - HP15_1047 0.12 -0.9 1,066,856 + HP15_1047 0.17 -0.8 1,066,886 - HP15_1047 0.18 +0.5 1,066,892 - HP15_1047 0.19 +0.1 1,066,897 + HP15_1047 0.19 +0.7 1,066,924 - HP15_1047 0.20 +0.1 1,066,937 + HP15_1047 0.20 +0.4 1,066,955 + HP15_1047 0.21 -2.6 1,066,980 + HP15_1047 0.22 +0.3 1,067,127 - HP15_1047 0.27 +0.6 1,067,188 + HP15_1047 0.30 -0.3 1,067,234 + HP15_1047 0.32 +0.6 1,067,241 + HP15_1047 0.32 +0.7 1,067,242 + HP15_1047 0.32 +0.2 1,067,278 - HP15_1047 0.33 +0.1 1,067,320 - HP15_1047 0.35 +0.7 1,067,343 - HP15_1047 0.36 +0.1 1,067,442 + HP15_1047 0.39 +0.2 1,067,460 + +2.0 1,067,475 - HP15_1047 0.41 +0.7 1,067,475 - HP15_1047 0.41 +0.2 1,067,769 + HP15_1047 0.52 +0.8 1,067,769 + HP15_1047 0.52 +0.4 1,067,769 + HP15_1047 0.52 +0.7 1,067,769 + HP15_1047 0.52 +0.7 1,067,777 - HP15_1047 0.52 +0.3 1,067,894 + HP15_1047 0.57 +0.4 1,067,959 - HP15_1047 0.59 +0.0 1,068,033 + HP15_1047 0.62 +0.2 1,068,054 - HP15_1047 0.63 +0.8 1,068,144 + HP15_1047 0.66 +0.4 1,068,162 + HP15_1047 0.67 +0.9 1,068,164 - HP15_1047 0.67 -0.2 1,068,164 - HP15_1047 0.67 -0.5 1,068,248 + HP15_1047 0.70 -1.9 1,068,248 + HP15_1047 0.70 -0.2 1,068,606 - HP15_1047 0.84 +1.9 1,068,608 + HP15_1047 0.84 +0.2 1,068,616 - HP15_1047 0.84 +0.3 1,068,723 - HP15_1047 0.88 +1.4 1,068,793 + +0.4 1,068,877 - -0.1 1,068,877 - +0.8 1,068,897 + -0.2 1,068,907 + -0.2 1,068,915 - +0.2 1,069,038 - -1.2 1,069,118 + +1.0 1,069,394 + HP15_1046 0.55 -0.1 1,069,432 - HP15_1046 0.63 -0.2 1,069,488 + HP15_1046 0.74 +0.5
Or see this region's nucleotide sequence