Strain Fitness in Marinobacter adhaerens HP15 around HP15_1008

Experiment: m.b. Paraquat dichloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1006 and HP15_1007 are separated by 104 nucleotidesHP15_1007 and HP15_1008 are separated by 24 nucleotidesHP15_1008 and HP15_1009 are separated by 4 nucleotides HP15_1006: HP15_1006 - transcriptional regulator, MerR family, at 1,017,254 to 1,017,697 _1006 HP15_1007: HP15_1007 - 3-hydroxyacyl-CoA dehydrogenase type II, at 1,017,802 to 1,018,563 _1007 HP15_1008: HP15_1008 - acyl-CoA dehydrogenase domain protein, at 1,018,588 to 1,019,739 _1008 HP15_1009: HP15_1009 - acyl-CoA thiolase, at 1,019,744 to 1,020,937 _1009 Position (kb) 1018 1019 1020Strain fitness (log2 ratio) -3 -2 -1 0 1at 1017.597 kb on + strand, within HP15_1006at 1017.605 kb on - strand, within HP15_1006at 1017.616 kb on - strand, within HP15_1006at 1017.847 kb on + strandat 1017.856 kb on - strandat 1017.919 kb on + strand, within HP15_1007at 1018.002 kb on + strand, within HP15_1007at 1018.052 kb on + strand, within HP15_1007at 1018.177 kb on + strand, within HP15_1007at 1018.295 kb on + strand, within HP15_1007at 1018.487 kb on + strandat 1018.679 kb on - strandat 1018.753 kb on - strand, within HP15_1008at 1018.816 kb on - strand, within HP15_1008at 1018.877 kb on - strand, within HP15_1008at 1019.002 kb on + strand, within HP15_1008at 1019.229 kb on + strand, within HP15_1008at 1019.363 kb on + strand, within HP15_1008at 1019.391 kb on + strand, within HP15_1008at 1019.433 kb on - strand, within HP15_1008at 1019.473 kb on - strand, within HP15_1008at 1019.506 kb on + strand, within HP15_1008at 1019.506 kb on - strand, within HP15_1008at 1019.548 kb on + strand, within HP15_1008at 1019.556 kb on - strand, within HP15_1008at 1019.556 kb on - strand, within HP15_1008at 1019.616 kb on + strand, within HP15_1008at 1019.730 kb on - strandat 1019.730 kb on - strandat 1019.730 kb on - strandat 1019.796 kb on + strandat 1019.796 kb on + strandat 1019.826 kb on + strandat 1019.827 kb on - strandat 1019.829 kb on - strandat 1019.838 kb on + strandat 1019.846 kb on - strandat 1019.893 kb on + strand, within HP15_1009at 1020.014 kb on + strand, within HP15_1009at 1020.064 kb on + strand, within HP15_1009at 1020.064 kb on + strand, within HP15_1009at 1020.064 kb on + strand, within HP15_1009at 1020.064 kb on + strand, within HP15_1009at 1020.064 kb on + strand, within HP15_1009at 1020.064 kb on + strand, within HP15_1009at 1020.184 kb on - strand, within HP15_1009at 1020.245 kb on - strand, within HP15_1009at 1020.255 kb on - strand, within HP15_1009at 1020.421 kb on - strand, within HP15_1009at 1020.530 kb on - strand, within HP15_1009at 1020.577 kb on - strand, within HP15_1009at 1020.613 kb on - strand, within HP15_1009at 1020.624 kb on + strand, within HP15_1009at 1020.632 kb on - strand, within HP15_1009

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml
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1,017,597 + HP15_1006 0.77 -0.5
1,017,605 - HP15_1006 0.79 +0.3
1,017,616 - HP15_1006 0.82 -0.6
1,017,847 + +0.2
1,017,856 - +0.2
1,017,919 + HP15_1007 0.15 -0.2
1,018,002 + HP15_1007 0.26 -0.6
1,018,052 + HP15_1007 0.33 -0.2
1,018,177 + HP15_1007 0.49 -0.5
1,018,295 + HP15_1007 0.65 -0.9
1,018,487 + -0.8
1,018,679 - -2.2
1,018,753 - HP15_1008 0.14 +0.0
1,018,816 - HP15_1008 0.20 +0.4
1,018,877 - HP15_1008 0.25 -0.7
1,019,002 + HP15_1008 0.36 -0.2
1,019,229 + HP15_1008 0.56 +0.2
1,019,363 + HP15_1008 0.67 -1.5
1,019,391 + HP15_1008 0.70 -1.0
1,019,433 - HP15_1008 0.73 +0.8
1,019,473 - HP15_1008 0.77 -0.2
1,019,506 + HP15_1008 0.80 -2.7
1,019,506 - HP15_1008 0.80 -1.0
1,019,548 + HP15_1008 0.83 -0.6
1,019,556 - HP15_1008 0.84 -1.2
1,019,556 - HP15_1008 0.84 -0.9
1,019,616 + HP15_1008 0.89 -1.0
1,019,730 - -3.0
1,019,730 - -0.4
1,019,730 - -0.7
1,019,796 + -0.6
1,019,796 + -0.3
1,019,826 + -0.6
1,019,827 - -0.6
1,019,829 - -0.1
1,019,838 + -0.4
1,019,846 - +0.9
1,019,893 + HP15_1009 0.12 -0.6
1,020,014 + HP15_1009 0.23 -0.2
1,020,064 + HP15_1009 0.27 +0.7
1,020,064 + HP15_1009 0.27 -1.3
1,020,064 + HP15_1009 0.27 +0.1
1,020,064 + HP15_1009 0.27 -0.4
1,020,064 + HP15_1009 0.27 +0.2
1,020,064 + HP15_1009 0.27 +0.3
1,020,184 - HP15_1009 0.37 -0.9
1,020,245 - HP15_1009 0.42 -0.7
1,020,255 - HP15_1009 0.43 -0.7
1,020,421 - HP15_1009 0.57 +0.0
1,020,530 - HP15_1009 0.66 -0.2
1,020,577 - HP15_1009 0.70 +0.9
1,020,613 - HP15_1009 0.73 +0.4
1,020,624 + HP15_1009 0.74 -0.7
1,020,632 - HP15_1009 0.74 -0.0

Or see this region's nucleotide sequence